Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0860
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1520 + 27648697-27649404                                         31   0.82 
08_02_1525 + 27661094-27661801                                         30   1.9  
08_02_1531 + 27674064-27674771                                         29   2.5  
03_05_0917 + 28774068-28774128,28774293-28774392,28774413-287750...    28   7.7  
01_06_0899 + 32837027-32837215,32837366-32837547,32839056-328391...    28   7.7  

>08_02_1520 + 27648697-27649404
          Length = 235

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 350 LLKNGRRYPK*RLKKYVSDRDVVNTQTLIDNSIHKTYSIFNKTISIWS 493
           L+K  +++ K  LKK VSD++      L+  +   T S+F  T+ + S
Sbjct: 126 LVKKAKKHSKKTLKKVVSDKEECRIVKLLSEARENTTSLFESTMHLLS 173


>08_02_1525 + 27661094-27661801
          Length = 235

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 350 LLKNGRRYPK*RLKKYVSDRDVVNTQTLIDNSIHKTYSIFNKTISIWS 493
           L+K  +++ K  +KK VSD++      L+  +   T S+F  TI + S
Sbjct: 126 LVKKAKKHSKKTVKKVVSDKEECKIVKLLSEAREITTSLFESTIHLLS 173


>08_02_1531 + 27674064-27674771
          Length = 235

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 350 LLKNGRRYPK*RLKKYVSDRDVVNTQTLIDNSIHKTYSIFNKTISIWS 493
           L+K  +++ K  +KK  SD++      L+ N+   T S+F  T+ + S
Sbjct: 126 LVKKAKKHSKKTVKKVASDKEDSKMVKLLSNAREITTSLFESTLDLLS 173


>03_05_0917 +
           28774068-28774128,28774293-28774392,28774413-28775056,
           28775567-28775727,28776362-28776430
          Length = 344

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 384 RYFGYRRPFFNNDQFYVTFCQFKNIS 307
           RYF  RRP F N   Y   CQ +  S
Sbjct: 187 RYFIPRRPLFQNCSLYRVLCQVRRAS 212


>01_06_0899 +
           32837027-32837215,32837366-32837547,32839056-32839102,
           32839426-32839500,32839595-32839726,32839800-32839972,
           32840005-32840277,32840386-32840519,32840640-32840726,
           32840834-32840948
          Length = 468

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +3

Query: 21  ILLCIITKLSRTQLHIFEKQKKKVSNKLA*CNTSYILILISVKDY 155
           ++L +      +++ +    KK+    L  CN  Y + ++SVKD+
Sbjct: 254 VVLILFCDPCSSKIEVLLPNKKRTEGTLEHCNLHYNVAIVSVKDF 298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,055,054
Number of Sequences: 37544
Number of extensions: 273111
Number of successful extensions: 510
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)