Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0860
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_51587| Best HMM Match : F5_F8_type_C (HMM E-Value=2.6e-37)          28   7.9  
SB_51586| Best HMM Match : EGF (HMM E-Value=4.7e-08)                   28   7.9  
SB_49966| Best HMM Match : Neur_chan_memb (HMM E-Value=0.064)          28   7.9  
SB_4118| Best HMM Match : EGF (HMM E-Value=1.8e-20)                    28   7.9  

>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2332

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -3

Query: 612  K*ILKRDEEQSKCPRPKGTKF 550
            K ILK+DEE    PRP G KF
Sbjct: 2153 KGILKKDEESEPSPRPPGVKF 2173


>SB_51587| Best HMM Match : F5_F8_type_C (HMM E-Value=2.6e-37)
          Length = 404

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -1

Query: 320 LKT*VLTDIFVCKFECVR 267
           LKT  +TD F C FECVR
Sbjct: 150 LKTVQVTDNFACVFECVR 167


>SB_51586| Best HMM Match : EGF (HMM E-Value=4.7e-08)
          Length = 154

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -1

Query: 320 LKT*VLTDIFVCKFECVR 267
           LKT  +TD F C FECVR
Sbjct: 52  LKTVQVTDNFACVFECVR 69


>SB_49966| Best HMM Match : Neur_chan_memb (HMM E-Value=0.064)
          Length = 100

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 100 LFETFFFCFSNICNCVRDNFVIMHNKILHEKKK 2
           L  +FFF F ++  CV  + +++  K   EKKK
Sbjct: 50  LMTSFFFVFMSLVECVVVDRLLLKRKAQEEKKK 82


>SB_4118| Best HMM Match : EGF (HMM E-Value=1.8e-20)
          Length = 339

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -1

Query: 320 LKT*VLTDIFVCKFECVR 267
           LKT  +TD F C FECVR
Sbjct: 176 LKTVKVTDNFACVFECVR 193


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,890,760
Number of Sequences: 59808
Number of extensions: 365240
Number of successful extensions: 787
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)