Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0860
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p...    32   0.32 
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr...    32   0.32 
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.     32   0.32 
AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched rela...    31   0.56 
AL110485-30|CAI79250.1|  287|Caenorhabditis elegans Hypothetical...    28   5.2  
Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z48585-4|CAA88480.1|  476|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
           protein R06C7.10 protein.
          Length = 1938

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -1

Query: 353 IMINST*RFVNLKT*VLTDIFVCKFECVRNSANLNYSNHHLDLWRIR-RYLHLLIFT 186
           +++ +  + V LK  ++ ++   KFE   + +NL + N    LW +R RY  +LI+T
Sbjct: 59  VIVTAGGKDVTLKKDIVQEVNPPKFEKTEDMSNLTFLNDASVLWNLRSRYAAMLIYT 115


>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical
           protein R06C7.10 protein.
          Length = 1938

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -1

Query: 353 IMINST*RFVNLKT*VLTDIFVCKFECVRNSANLNYSNHHLDLWRIR-RYLHLLIFT 186
           +++ +  + V LK  ++ ++   KFE   + +NL + N    LW +R RY  +LI+T
Sbjct: 59  VIVTAGGKDVTLKKDIVQEVNPPKFEKTEDMSNLTFLNDASVLWNLRSRYAAMLIYT 115


>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
          Length = 1938

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -1

Query: 353 IMINST*RFVNLKT*VLTDIFVCKFECVRNSANLNYSNHHLDLWRIR-RYLHLLIFT 186
           +++ +  + V LK  ++ ++   KFE   + +NL + N    LW +R RY  +LI+T
Sbjct: 59  VIVTAGGKDVTLKKDIVQEVNPPKFEKTEDMSNLTFLNDASVLWNLRSRYAAMLIYT 115


>AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched related
           family protein 15 protein.
          Length = 840

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 405 SLTYFFNRYFGYRRPFFNND-QFYVTFCQFKNISFNRYF 292
           S  ++ N +  YR+ FF  D +FY T   F  +SFN ++
Sbjct: 565 STNFWLNEFNNYRQFFFQEDAKFYETLKSFLKVSFNSHW 603


>AL110485-30|CAI79250.1|  287|Caenorhabditis elegans Hypothetical
           protein Y46G5A.39 protein.
          Length = 287

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -1

Query: 305 LTDIFVCKFECVRNSANLNYSNHHLDLWRIRRYLHLLIFTCTFKTHRDNKIILYG 141
           L D+ +C         N+N  + +L L + +   HL  F    ++H D  IIL G
Sbjct: 189 LIDLMMCSSFVTLGRININSLHLNLLLKKWKENSHLEYFLAQMESHLDKSIILEG 243


>Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical
           protein D2085.1 protein.
          Length = 2198

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 307 TYVFKLTKRYVELIIIKERPT 369
           TY   +TK YV  +I KERPT
Sbjct: 447 TYFLPITKEYVTDVIKKERPT 467


>Z48585-4|CAA88480.1|  476|Caenorhabditis elegans Hypothetical
           protein ZK673.4 protein.
          Length = 476

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 353 LKNGRRYPK*RLKKYVSDRDVVNTQTLIDNSIHKTYSIFNKTISI 487
           L++   Y K   K       + N + L DN+ H  +SIFNK + +
Sbjct: 228 LRHSLHYYKAMHKTLGMSEQMENIEDLPDNAFHTGHSIFNKILKM 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,701,877
Number of Sequences: 27780
Number of extensions: 300788
Number of successful extensions: 704
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)