Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0858
         (605 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    23   2.6  
DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory pro...    22   4.6  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    22   4.6  
DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory pro...    21   6.1  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   8.1  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   8.1  

>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 488 LAAHPPFPAGVIAKRPAPIALPNSCA 565
           L+  P  P GV  KR  P AL  +CA
Sbjct: 48  LSKGPCPPQGVDLKRVLPEALQTNCA 73


>DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory
           protein 14 protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 509 PAGVIAKRPAPIALPNSCA 565
           P G   KR  P AL N CA
Sbjct: 55  PEGEELKRDIPEALQNECA 73


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 387 GPPLEVGGGIYVV 349
           GPP+EVG  +YV+
Sbjct: 62  GPPVEVGVTMYVL 74


>DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory
           protein 13 protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 509 PAGVIAKRPAPIALPNSCA 565
           P+G   K+  P AL N CA
Sbjct: 53  PSGEELKKDIPDALKNECA 71


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -3

Query: 147 KVRTYCGTL*SRLCA*ELVYCGRFFLVRELLCI 49
           KV T  G L       +LVYC  F  +  L CI
Sbjct: 20  KVLTILGLLSCSFPKKKLVYCIIFGAIATLTCI 52


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -3

Query: 147 KVRTYCGTL*SRLCA*ELVYCGRFFLVRELLCI 49
           KV T  G L       +LVYC  F  +  L CI
Sbjct: 16  KVLTILGLLSCSFPKKKLVYCIIFGAIATLTCI 48


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,152
Number of Sequences: 336
Number of extensions: 3424
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)