Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0858
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    30   0.23 
SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces...    26   4.9  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   4.9  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    25   6.5  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    25   8.6  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    25   8.6  

>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -1

Query: 308 LVHLSEPLNKKR--C*VSWDSDRNEVPCYKNINFKFYSRYKDNITGGF 171
           L H+ E L      C   +D  R ++ C +  N K +SR+ + ITG F
Sbjct: 416 LQHMLERLTDHNFSCEFKYDGQRAQIHCDRLGNIKIFSRHLEEITGRF 463


>SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 87  NTLTLKHTTVIKVYHNKFALYRITV 161
           N   + +  + +V+H+ FALY+ T+
Sbjct: 146 NRFDVPYYIIFRVFHDSFALYKYTI 170


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 455  WENPGVTQLNRLAAHPPFPAGVIAKRPAPIALPNS 559
            W N   + L+  AA PP P   + K   P A P S
Sbjct: 1868 WVNDDGSDLSNQAAPPPPPPMALPKAGPPSAAPTS 1902


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 458 ENPGVTQLNRL-AAHPPFPAGVIAK-RPAPIAL 550
           E P  T   +  + HPP+PAG+  K +P+ + L
Sbjct: 199 EEPSFTVKEKCPSGHPPWPAGICTKCQPSTVML 231


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
 Frame = -1

Query: 461 FPSHDVVKRRPVNCNTTHYRANWVPGPPSRWVAAFTL*KGSITT*H*MGCELVHLS--EP 288
           FPS +  K +    N T  +  W+ G P++  + +    GS++T   +  +  H +   P
Sbjct: 300 FPSENANKTQINIENATCSKMTWIMGSPTKEKSQW----GSVST-TGVSNQQNHPAAWNP 354

Query: 287 LNKKRC*VSWDSDRNEVPCYKN 222
            NK +  V WDS R   P   N
Sbjct: 355 DNKPQSIVHWDSLRESSPSIPN 376


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 22  SFETKFLKDDAEEFPNQEKTS 84
           +FE   L+DD EE PN+E  S
Sbjct: 545 NFEIAHLEDDDEEPPNEEVAS 565


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,630,816
Number of Sequences: 5004
Number of extensions: 54832
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)