Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0858
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0036 + 3217163-3217584,3217752-3218322                           30   1.2  
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510...    28   6.6  
01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345     28   6.6  
01_01_0957 + 7516314-7517489                                           28   6.6  
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    27   8.7  
01_07_0037 + 40657449-40658010,40658567-40658901                       27   8.7  

>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 417 ITIHWPSFYNVV-TGKTLALPNLIALQH 497
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>03_02_0027 +
           5100865-5100878,5102241-5102708,5102795-5103021,
           5103670-5104577
          Length = 538

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 494 AHPPFPAGVIAKRPAPIALPNSCAA*MANG 583
           A  P P  V A  P P+A PN C +  ++G
Sbjct: 249 APAPAPPPVTAPPPPPVAAPNDCVSSSSSG 278


>01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345
          Length = 304

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 549 RAIGAGLFAITPAGKGGCAARRLSWVTPGFSQSRR 445
           RA GAGL A+ P  +GG   RR +W   G   + R
Sbjct: 144 RAAGAGLQAVVPEARGG--ERRRAWRRRGLVATLR 176


>01_01_0957 + 7516314-7517489
          Length = 391

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -2

Query: 577 RHSGCATV-GKG-DRCGPLRYYASWERGMCCKAIKLG 473
           R   CA   G+G + CG  R+   WE G  CK +  G
Sbjct: 329 RGEACAAKDGRGCEGCGGARFVPCWECGGSCKVVAAG 365


>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 429 WPSFYNVV-TGKTLALPNLIALQH 497
           W  F N+V +G TL+LP  + LQH
Sbjct: 133 WSRFTNLVQSGPTLSLPEYVLLQH 156


>01_07_0037 + 40657449-40658010,40658567-40658901
          Length = 298

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -2

Query: 355 RCRRAP*PLNIRWAASSSIYLSH*IKK-DVRCR 260
           R RR+P P+ ++WAA S+    H +++  ++CR
Sbjct: 42  RGRRSPQPVRLKWAAVSTYCRRHGVERGPMQCR 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,988,841
Number of Sequences: 37544
Number of extensions: 401469
Number of successful extensions: 1080
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)