Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0858
         (605 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052102-1|AAK93526.1|  548|Drosophila melanogaster SD04977p pro...    29   4.9  
AF124744-1|AAD32858.1|  817|Drosophila melanogaster DNA replicat...    29   4.9  
AE014298-920|AAF46184.1|  817|Drosophila melanogaster CG4039-PA ...    29   4.9  
AB010108-1|BAA34732.1|  817|Drosophila melanogaster MCM6 protein.      29   6.5  

>AY052102-1|AAK93526.1|  548|Drosophila melanogaster SD04977p
           protein.
          Length = 548

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
 Frame = +3

Query: 132 NKFALYRITVG-CCETSSYIIFIPRIELKINI--FIARNFVPIRVPRHLTSFFI*WLR*M 302
           ++F L+ I V  C E   Y I    ++L  NI   + R +    V R++T F   +   +
Sbjct: 251 SRFDLFFILVDECNEVVDYAIARKIVDLHSNIEESVERAYTREEVLRYVT-FARQFKPVI 309

Query: 303 DELAAHLMLSGYGALLQRKCRHPPRGGARYPIRPIVSRITI 425
            + A H+++  YG L QR      R   R  +R + S I +
Sbjct: 310 SQEAGHMLVENYGHLRQRDTGTSGRSTWRITVRQLESMIRL 350


>AF124744-1|AAD32858.1|  817|Drosophila melanogaster DNA replication
           factor MCM6 protein.
          Length = 817

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
 Frame = +3

Query: 132 NKFALYRITVG-CCETSSYIIFIPRIELKINI--FIARNFVPIRVPRHLTSFFI*WLR*M 302
           ++F L+ I V  C E   Y I    ++L  NI   + R +    V R++T F   +   +
Sbjct: 520 SRFDLFFILVDECNEVVDYAIARKIVDLHSNIEESVERAYTREEVLRYVT-FARQFKPVI 578

Query: 303 DELAAHLMLSGYGALLQRKCRHPPRGGARYPIRPIVSRITI 425
            + A H+++  YG L QR      R   R  +R + S I +
Sbjct: 579 SQEAGHMLVENYGHLRQRDTGTSGRSTWRITVRQLESMIRL 619


>AE014298-920|AAF46184.1|  817|Drosophila melanogaster CG4039-PA
           protein.
          Length = 817

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
 Frame = +3

Query: 132 NKFALYRITVG-CCETSSYIIFIPRIELKINI--FIARNFVPIRVPRHLTSFFI*WLR*M 302
           ++F L+ I V  C E   Y I    ++L  NI   + R +    V R++T F   +   +
Sbjct: 520 SRFDLFFILVDECNEVVDYAIARKIVDLHSNIEESVERAYTREEVLRYVT-FARQFKPVI 578

Query: 303 DELAAHLMLSGYGALLQRKCRHPPRGGARYPIRPIVSRITI 425
            + A H+++  YG L QR      R   R  +R + S I +
Sbjct: 579 SQEAGHMLVENYGHLRQRDTGTSGRSTWRITVRQLESMIRL 619


>AB010108-1|BAA34732.1|  817|Drosophila melanogaster MCM6 protein.
          Length = 817

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
 Frame = +3

Query: 132 NKFALYRITVG-CCETSSYIIFIPRIEL--KINIFIARNFVPIRVPRHLTSFFI*WLR*M 302
           ++F L+ I V  C E   Y I    ++L  KI   + R +    V R++T F   +   +
Sbjct: 520 SRFDLFFILVDECNEVVDYAIARKIVDLHSKIEESVERAYTREEVLRYVT-FARQFKPVI 578

Query: 303 DELAAHLMLSGYGALLQRKCRHPPRGGARYPIRPIVSRITI 425
            + A H+++  YG L QR      R   R  +R + S I +
Sbjct: 579 SQEAGHMLVENYGHLRQRDTGTSGRSTWRITVRQLESMIRL 619


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,115,195
Number of Sequences: 53049
Number of extensions: 650085
Number of successful extensions: 1545
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1545
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2482967880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)