Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0858
(605 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.1
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.1
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.1
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.1
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.1
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.1
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 22 4.1
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 22 4.1
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 22 5.4
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 22 5.4
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 22 5.4
AF080430-1|AAC28863.2| 208|Apis mellifera ribosomal protein S8 ... 21 7.1
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 69 VRELLCIVLKELRFKTSLKKK 7
++E L +LKELRF T KK
Sbjct: 394 MQEELHTILKELRFITDRMKK 414
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 69 VRELLCIVLKELRFKTSLKKK 7
++E L +LKELRF T KK
Sbjct: 394 MQEELHTILKELRFITDRMKK 414
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 69 VRELLCIVLKELRFKTSLKKK 7
++E L +LKELRF T KK
Sbjct: 394 MQEELHTILKELRFITDRMKK 414
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 69 VRELLCIVLKELRFKTSLKKK 7
++E L +LKELRF T KK
Sbjct: 394 MQEELHTILKELRFITDRMKK 414
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 69 VRELLCIVLKELRFKTSLKKK 7
++E L +LKELRF T KK
Sbjct: 394 MQEELHTILKELRFITDRMKK 414
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 69 VRELLCIVLKELRFKTSLKKK 7
++E L +LKELRF T KK
Sbjct: 394 MQEELHTILKELRFITDRMKK 414
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 4.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 69 VRELLCIVLKELRFKTSLKKK 7
++E L +LKELRF T KK
Sbjct: 462 MQEELHTILKELRFITDRMKK 482
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 4.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 69 VRELLCIVLKELRFKTSLKKK 7
++E L +LKELRF T KK
Sbjct: 462 MQEELHTILKELRFITDRMKK 482
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 22.2 bits (45), Expect = 4.1
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Frame = +3
Query: 369 PPRGGARYPIRPIVSRITIHWPSFYN---VVTGKTL 467
PP Y S I +HW S +N +TG TL
Sbjct: 1404 PPSAPVLYVTSSTSSSILLHWKSGHNGGASLTGYTL 1439
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 22.2 bits (45), Expect = 4.1
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Frame = +3
Query: 369 PPRGGARYPIRPIVSRITIHWPSFYN---VVTGKTL 467
PP Y S I +HW S +N +TG TL
Sbjct: 1400 PPSAPVLYVTSSTSSSILLHWKSGHNGGASLTGYTL 1435
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.8 bits (44), Expect = 5.4
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3
Query: 387 GPPLEVGGGIYVV 349
GPP+EVG +YV+
Sbjct: 33 GPPVEVGVTMYVL 45
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.8 bits (44), Expect = 5.4
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3
Query: 387 GPPLEVGGGIYVV 349
GPP+EVG +YV+
Sbjct: 33 GPPVEVGVTMYVL 45
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 21.8 bits (44), Expect = 5.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -1
Query: 455 SHDVVKRRPVNCNTTHYRANWVPGP 381
S + K++P +C+T YR V P
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTP 584
>AF080430-1|AAC28863.2| 208|Apis mellifera ribosomal protein S8
protein.
Length = 208
Score = 21.4 bits (43), Expect = 7.1
Identities = 14/53 (26%), Positives = 22/53 (41%)
Frame = -2
Query: 547 GDRCGPLRYYASWERGMCCKAIKLGNARVFPVTTL*NDGQ*IVIRLTIGRIGY 389
G + P+R +E G KLG R+ V T + + +RL G +
Sbjct: 15 GGKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGNKKYRALRLDTGNFSW 67
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,391
Number of Sequences: 438
Number of extensions: 4583
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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