Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0857
         (637 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    27   0.13 
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    23   2.1  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   6.5  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   8.6  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   8.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.6  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   8.6  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   8.6  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 319 TSFICT*SDSVRETDGCGLQWYCVLH 396
           T+ +CT +  VR+ D C + +YC+ +
Sbjct: 418 TTTLCTKAGYVRDPDDCSIFYYCLAY 443


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +2

Query: 497 LREVARLVDIIKTIFMCRKLPCIFFLSLIGKRLTARTQA*LVIAHYC 637
           +R+  + ++I+K++   R+ P  + +SLIG     R +  L++  YC
Sbjct: 494 IRQFTQEINIMKSV---RQHP--YIVSLIGCVTEGRAEGPLLVVEYC 535


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 62  PARTFATDTEPRDMGPRN 9
           P R    D + RD+ PRN
Sbjct: 187 PDRPLPLDQKARDLSPRN 204


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 489 FFNSPHLKEAA*QSGSSRHQPWHS 418
           FF + H+++   Q G   HQ ++S
Sbjct: 49  FFGNHHIQQQQLQYGYHNHQNYNS 72


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 489 FFNSPHLKEAA*QSGSSRHQPWHS 418
           FF + H+++   Q G   HQ ++S
Sbjct: 49  FFGNHHIQQQQLQYGYHNHQNYNS 72


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 624 ITSYAWVRAVSRLPISDKKKI 562
           + S  W R   +LPI+ K+K+
Sbjct: 539 VDSVVWERDGRQLPINRKQKV 559


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 489 FFNSPHLKEAA*QSGSSRHQPWHS 418
           FF + H+++   Q G   HQ ++S
Sbjct: 49  FFGNHHIQQQQLQYGYHNHQNYNS 72


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 489 FFNSPHLKEAA*QSGSSRHQPWHS 418
           FF + H+++   Q G   HQ ++S
Sbjct: 49  FFGNHHIQQQQLQYGYHNHQNYNS 72


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,109
Number of Sequences: 336
Number of extensions: 2647
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)