BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0857 (637 letters) Database: tribolium 336 sequences; 122,585 total letters Searching.......................................................done Score E Sequences producing significant alignments: (bits) Value EF125543-1|ABL73927.1| 475|Tribolium castaneum chitinase 4 prot... 27 0.13 AY618898-1|AAU87291.1| 803|Tribolium castaneum receptor tyrosin... 23 2.1 AJ307577-1|CAC84070.1| 301|Tribolium castaneum dachshund protein. 21 6.5 U81040-1|AAB39356.1| 283|Tribolium castaneum TC Deformed protein. 21 8.6 U81038-1|AAB39355.1| 412|Tribolium castaneum transcription fact... 21 8.6 DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad... 21 8.6 AF321227-3|AAK16423.1| 412|Tribolium castaneum Dfd protein. 21 8.6 AF243042-1|AAF68438.1| 126|Tribolium castaneum mutant transcrip... 21 8.6 >EF125543-1|ABL73927.1| 475|Tribolium castaneum chitinase 4 protein. Length = 475 Score = 27.1 bits (57), Expect = 0.13 Identities = 9/26 (34%), Positives = 17/26 (65%) Frame = +1 Query: 319 TSFICT*SDSVRETDGCGLQWYCVLH 396 T+ +CT + VR+ D C + +YC+ + Sbjct: 418 TTTLCTKAGYVRDPDDCSIFYYCLAY 443 >AY618898-1|AAU87291.1| 803|Tribolium castaneum receptor tyrosine kinase Torso-likeprotein protein. Length = 803 Score = 23.0 bits (47), Expect = 2.1 Identities = 13/47 (27%), Positives = 27/47 (57%) Frame = +2 Query: 497 LREVARLVDIIKTIFMCRKLPCIFFLSLIGKRLTARTQA*LVIAHYC 637 +R+ + ++I+K++ R+ P + +SLIG R + L++ YC Sbjct: 494 IRQFTQEINIMKSV---RQHP--YIVSLIGCVTEGRAEGPLLVVEYC 535 >AJ307577-1|CAC84070.1| 301|Tribolium castaneum dachshund protein. Length = 301 Score = 21.4 bits (43), Expect = 6.5 Identities = 8/18 (44%), Positives = 10/18 (55%) Frame = -3 Query: 62 PARTFATDTEPRDMGPRN 9 P R D + RD+ PRN Sbjct: 187 PDRPLPLDQKARDLSPRN 204 >U81040-1|AAB39356.1| 283|Tribolium castaneum TC Deformed protein. Length = 283 Score = 21.0 bits (42), Expect = 8.6 Identities = 8/24 (33%), Positives = 14/24 (58%) Frame = -2 Query: 489 FFNSPHLKEAA*QSGSSRHQPWHS 418 FF + H+++ Q G HQ ++S Sbjct: 49 FFGNHHIQQQQLQYGYHNHQNYNS 72 >U81038-1|AAB39355.1| 412|Tribolium castaneum transcription factor Deformed protein. Length = 412 Score = 21.0 bits (42), Expect = 8.6 Identities = 8/24 (33%), Positives = 14/24 (58%) Frame = -2 Query: 489 FFNSPHLKEAA*QSGSSRHQPWHS 418 FF + H+++ Q G HQ ++S Sbjct: 49 FFGNHHIQQQQLQYGYHNHQNYNS 72 >DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome adhesion molecule splicevariant 3.12.3.1 protein. Length = 1639 Score = 21.0 bits (42), Expect = 8.6 Identities = 8/21 (38%), Positives = 13/21 (61%) Frame = -2 Query: 624 ITSYAWVRAVSRLPISDKKKI 562 + S W R +LPI+ K+K+ Sbjct: 539 VDSVVWERDGRQLPINRKQKV 559 >AF321227-3|AAK16423.1| 412|Tribolium castaneum Dfd protein. Length = 412 Score = 21.0 bits (42), Expect = 8.6 Identities = 8/24 (33%), Positives = 14/24 (58%) Frame = -2 Query: 489 FFNSPHLKEAA*QSGSSRHQPWHS 418 FF + H+++ Q G HQ ++S Sbjct: 49 FFGNHHIQQQQLQYGYHNHQNYNS 72 >AF243042-1|AAF68438.1| 126|Tribolium castaneum mutant transcription factor TcDfd1 protein. Length = 126 Score = 21.0 bits (42), Expect = 8.6 Identities = 8/24 (33%), Positives = 14/24 (58%) Frame = -2 Query: 489 FFNSPHLKEAA*QSGSSRHQPWHS 418 FF + H+++ Q G HQ ++S Sbjct: 49 FFGNHHIQQQQLQYGYHNHQNYNS 72 Database: tribolium Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 122,585 Number of sequences in database: 336 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 141,109 Number of Sequences: 336 Number of extensions: 2647 Number of successful extensions: 10 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 10 length of database: 122,585 effective HSP length: 54 effective length of database: 104,441 effective search space used: 16397237 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -