Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0857
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    27   3.0  
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo...    26   5.2  
SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyce...    25   9.1  
SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2 |Schizosacch...    25   9.1  

>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 509 QPRVIIYFLIHRT*RKPPDNQVPLGTSPGTRIRTG 405
           +P V+   L H T RK  +NQ  +GT  GTR   G
Sbjct: 26  EPAVLFSILDHST-RKSENNQRVIGTLLGTRSEDG 59


>SPAPB17E12.10c |||SAM-dependent
           methyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -2

Query: 591 RLPISDKKKIQGNFRHMKIVLIISTRRATSRNYLFFN 481
           RLP  +   IQGN   M+I L I+     SRN  F N
Sbjct: 112 RLP-ENSSMIQGNILSMEIQLEIAKAAIRSRNSFFRN 147


>SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 344 IAFEKLTDVDFSGTAYYTVRNLSLY--ECQGWCR 439
           + FE + D  + G   YT+RN+  Y  E +G+ R
Sbjct: 58  VLFESVVDRYYDGFEVYTLRNIFSYPPELKGYMR 91


>SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 213

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 369 WTSVVLRITPCGTCPYT--SARAGAERNLIVRRLPSGAVN*KINNY 500
           W+S+V ++ PC   P+   +   G  R +  ++L   A N  IN +
Sbjct: 21  WSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKF 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,659
Number of Sequences: 5004
Number of extensions: 46256
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)