Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0857
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0465 - 3304417-3306834                                           32   0.33 
12_01_0199 - 1467137-1467172,1467302-1467391,1468304-1468396,146...    31   0.77 
11_01_0194 + 1539847-1541533,1541650-1541730,1541773-1542335           31   0.77 
12_01_0198 - 1461305-1463812                                           31   1.0  
11_01_0192 - 1523572-1526097                                           31   1.0  
03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561     31   1.0  
01_06_0195 + 27379266-27379300,27379870-27382174                       31   1.0  
01_06_0414 + 29182350-29183812,29184211-29184346                       30   1.8  
06_01_0889 - 6807449-6809257                                           28   5.4  
10_08_0646 + 19572642-19572792,19572973-19573117,19573207-195733...    27   9.4  

>06_01_0465 - 3304417-3306834
          Length = 805

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 350 FEKLTDVDFSGTAYYTVRNLSLYECQGWCREEPDCQAASFRCG 478
           F+K+   DF G      + ++L++C+  C +  DCQA  +  G
Sbjct: 351 FKKIPHTDFYGYDLNYSKPVTLWQCKRMCLDNADCQAFEYHKG 393


>12_01_0199 -
           1467137-1467172,1467302-1467391,1468304-1468396,
           1468488-1469515,1470005-1470552,1470656-1470695,
           1473774-1475196
          Length = 1085

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 359 LTDVDFSGTAYYTVRNLSLYECQGWCREEPDCQAASFRCGE 481
           L   DF G    +  NLSL EC   C  EP C    ++ G+
Sbjct: 357 LPHTDFWGFDINSSENLSLDECSTRCMSEPSCVVFQYKQGK 397


>11_01_0194 + 1539847-1541533,1541650-1541730,1541773-1542335
          Length = 776

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 359 LTDVDFSGTAYYTVRNLSLYECQGWCREEPDCQAASFRCGE 481
           L   DF G    +  NLSL EC   C  EP C    ++ G+
Sbjct: 365 LPHTDFWGFDINSSENLSLDECSTRCMSEPSCVVFQYKQGK 405


>12_01_0198 - 1461305-1463812
          Length = 835

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 359 LTDVDFSGTAYYTVRNLSLYECQGWCREEPDCQAASFRCG 478
           L   DF G    +  +LSL+EC   C  EP C    ++ G
Sbjct: 359 LPHTDFWGFDINSSAHLSLHECTARCMSEPSCVVFEYKQG 398


>11_01_0192 - 1523572-1526097
          Length = 841

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 359 LTDVDFSGTAYYTVRNLSLYECQGWCREEPDCQAASFRCG 478
           L   DF G    +  +LSL+EC   C  EP C    ++ G
Sbjct: 361 LPHTDFWGFDINSSAHLSLHECAARCMSEPSCVVFEYKQG 400


>03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561
          Length = 827

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 350 FEKLTDVDFSGTAYYTVRNLSLYECQGWCREEPDCQAASFRCGE 481
           F  L D DF G+    V ++S   C   CR + +C+   +  GE
Sbjct: 337 FVHLPDTDFWGSDQQLVNHVSWQACMNICRSDCNCKGFQYLKGE 380


>01_06_0195 + 27379266-27379300,27379870-27382174
          Length = 779

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 350 FEKLTDVDFSGTAYYTVRNLSLYECQGWCREEPDCQAASFRCG 478
           F KL   DF G      +++SL EC+  C +   C A +++ G
Sbjct: 327 FFKLAQTDFYGFDLIINQSISLKECKKTCLDICSCSAVTYKTG 369


>01_06_0414 + 29182350-29183812,29184211-29184346
          Length = 532

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 368 VDFSGTAYYTVRNLSLYECQGWCREEPDCQAASF 469
           VD  GT    V+ L LYE Q   + E  CQA++F
Sbjct: 495 VDSLGTVARNVKVLRLYELQILSKSEEQCQASAF 528


>06_01_0889 - 6807449-6809257
          Length = 602

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 443 EPDCQAASFRCGELKNK*LREV-ARLVDIIKTI 538
           E D +A  FRCG L++   RE+ A  VD++  I
Sbjct: 474 EVDGEACEFRCGNLRHPQAREIYAMAVDMVSRI 506


>10_08_0646 +
           19572642-19572792,19572973-19573117,19573207-19573375,
           19574160-19574430,19574527-19574789,19574872-19575087,
           19575215-19575326,19575382-19575473
          Length = 472

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 469 EGSRLTIRFLSAPALALV*GQVPHGVIRST 380
           EGS  T  FL  PAL+    ++PHG I +T
Sbjct: 260 EGSMYTFVFLWTPALSPNDEEIPHGFIFAT 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,083,996
Number of Sequences: 37544
Number of extensions: 305680
Number of successful extensions: 608
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)