Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0857
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54453| Best HMM Match : PAN (HMM E-Value=3.4e-05)                   29   2.4  
SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)               28   7.3  
SB_43718| Best HMM Match : PAN (HMM E-Value=3.6e-06)                   27   9.7  

>SB_54453| Best HMM Match : PAN (HMM E-Value=3.4e-05)
          Length = 82

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 380 GTAYYTVRNLSLYECQGWCREEPDCQAASF 469
           G +Y T+ N+ +++C   C+ E  CQ+  F
Sbjct: 17  GYSYMTLPNMDVHQCLQRCKMETQCQSLGF 46


>SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
          Length = 659

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -3

Query: 479 HRT*RKPPDNQVPLGTSPGTRIRTGSARCNTQYH*SPHPSVSRTLSD 339
           H T  KP  +  P+G +  T+ +T SA C+T    S  P  S T+ D
Sbjct: 149 HTTSTKPQTSS-PIGPTTSTQHQTSSAICHTT---STQPQTSSTVGD 191


>SB_43718| Best HMM Match : PAN (HMM E-Value=3.6e-06)
          Length = 88

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 356 KLTDVDFSGTAYYTVRNLSLYECQGWCREEPDCQAASFR 472
           ++ +  F G     ++N +L  C+  C  EPDC + ++R
Sbjct: 11  RVANKTFQGKIIKNLKNKTLGACEVECFVEPDCLSYNYR 49


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,847,841
Number of Sequences: 59808
Number of extensions: 358494
Number of successful extensions: 692
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)