BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0857 (637 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.81 EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.81 EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.81 EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.81 EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.81 EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.81 DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.81 DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.81 AB013288-1|BAA87894.1| 149|Apis mellifera protein kinase C prot... 22 5.7 AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 7.6 >EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 6 protein. Length = 461 Score = 24.6 bits (51), Expect = 0.81 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = +2 Query: 527 IKTIFMCRKLPCIFFLSLIGKRLTART 607 IK +F+ + LPC+ +S GK++T +T Sbjct: 295 IKMLFL-QWLPCLLRMSRPGKKITKKT 320 >EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 5 protein. Length = 461 Score = 24.6 bits (51), Expect = 0.81 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = +2 Query: 527 IKTIFMCRKLPCIFFLSLIGKRLTART 607 IK +F+ + LPC+ +S GK++T +T Sbjct: 295 IKMLFL-QWLPCLLRMSRPGKKITKKT 320 >EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 4 protein. Length = 461 Score = 24.6 bits (51), Expect = 0.81 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = +2 Query: 527 IKTIFMCRKLPCIFFLSLIGKRLTART 607 IK +F+ + LPC+ +S GK++T +T Sbjct: 295 IKMLFL-QWLPCLLRMSRPGKKITKKT 320 >EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 3 protein. Length = 461 Score = 24.6 bits (51), Expect = 0.81 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = +2 Query: 527 IKTIFMCRKLPCIFFLSLIGKRLTART 607 IK +F+ + LPC+ +S GK++T +T Sbjct: 295 IKMLFL-QWLPCLLRMSRPGKKITKKT 320 >EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 2 protein. Length = 461 Score = 24.6 bits (51), Expect = 0.81 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = +2 Query: 527 IKTIFMCRKLPCIFFLSLIGKRLTART 607 IK +F+ + LPC+ +S GK++T +T Sbjct: 295 IKMLFL-QWLPCLLRMSRPGKKITKKT 320 >EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 1 protein. Length = 461 Score = 24.6 bits (51), Expect = 0.81 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = +2 Query: 527 IKTIFMCRKLPCIFFLSLIGKRLTART 607 IK +F+ + LPC+ +S GK++T +T Sbjct: 295 IKMLFL-QWLPCLLRMSRPGKKITKKT 320 >DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine receptor alpha6subunit protein. Length = 529 Score = 24.6 bits (51), Expect = 0.81 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = +2 Query: 527 IKTIFMCRKLPCIFFLSLIGKRLTART 607 IK +F+ + LPC+ +S GK++T +T Sbjct: 363 IKMLFL-QWLPCLLRMSRPGKKITKKT 388 >DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine receptor alpha6subunit protein. Length = 529 Score = 24.6 bits (51), Expect = 0.81 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = +2 Query: 527 IKTIFMCRKLPCIFFLSLIGKRLTART 607 IK +F+ + LPC+ +S GK++T +T Sbjct: 363 IKMLFL-QWLPCLLRMSRPGKKITKKT 388 >AB013288-1|BAA87894.1| 149|Apis mellifera protein kinase C protein. Length = 149 Score = 21.8 bits (44), Expect = 5.7 Identities = 9/20 (45%), Positives = 12/20 (60%) Frame = +1 Query: 538 FHVSEIALYFFFIADRQTTY 597 F+ SEIA+ FF+ R Y Sbjct: 89 FYASEIAIGLFFLHGRGIVY 108 >AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. Length = 1946 Score = 21.4 bits (43), Expect = 7.6 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = -2 Query: 624 ITSYAWVRAVSRLPISDKKKIQGN 553 I S W R LPI+ K+K+ N Sbjct: 519 IESIVWERDTRVLPINRKQKVFPN 542 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 169,927 Number of Sequences: 438 Number of extensions: 3393 Number of successful extensions: 11 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 11 length of database: 146,343 effective HSP length: 55 effective length of database: 122,253 effective search space used: 19071468 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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