Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0857
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.81 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.81 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.81 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.81 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.81 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.81 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.81 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.81 
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    22   5.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.6  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 527 IKTIFMCRKLPCIFFLSLIGKRLTART 607
           IK +F+ + LPC+  +S  GK++T +T
Sbjct: 295 IKMLFL-QWLPCLLRMSRPGKKITKKT 320


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 527 IKTIFMCRKLPCIFFLSLIGKRLTART 607
           IK +F+ + LPC+  +S  GK++T +T
Sbjct: 295 IKMLFL-QWLPCLLRMSRPGKKITKKT 320


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 527 IKTIFMCRKLPCIFFLSLIGKRLTART 607
           IK +F+ + LPC+  +S  GK++T +T
Sbjct: 295 IKMLFL-QWLPCLLRMSRPGKKITKKT 320


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 527 IKTIFMCRKLPCIFFLSLIGKRLTART 607
           IK +F+ + LPC+  +S  GK++T +T
Sbjct: 295 IKMLFL-QWLPCLLRMSRPGKKITKKT 320


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 527 IKTIFMCRKLPCIFFLSLIGKRLTART 607
           IK +F+ + LPC+  +S  GK++T +T
Sbjct: 295 IKMLFL-QWLPCLLRMSRPGKKITKKT 320


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 527 IKTIFMCRKLPCIFFLSLIGKRLTART 607
           IK +F+ + LPC+  +S  GK++T +T
Sbjct: 295 IKMLFL-QWLPCLLRMSRPGKKITKKT 320


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 527 IKTIFMCRKLPCIFFLSLIGKRLTART 607
           IK +F+ + LPC+  +S  GK++T +T
Sbjct: 363 IKMLFL-QWLPCLLRMSRPGKKITKKT 388


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 527 IKTIFMCRKLPCIFFLSLIGKRLTART 607
           IK +F+ + LPC+  +S  GK++T +T
Sbjct: 363 IKMLFL-QWLPCLLRMSRPGKKITKKT 388


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 538 FHVSEIALYFFFIADRQTTY 597
           F+ SEIA+  FF+  R   Y
Sbjct: 89  FYASEIAIGLFFLHGRGIVY 108


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 624 ITSYAWVRAVSRLPISDKKKIQGN 553
           I S  W R    LPI+ K+K+  N
Sbjct: 519 IESIVWERDTRVLPINRKQKVFPN 542


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,927
Number of Sequences: 438
Number of extensions: 3393
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)