Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0857
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56120.1 68416.m06237 Met-10+ like family protein non-consens...    29   2.0  
At3g51710.1 68416.m05670 curculin-like (mannose-binding) lectin ...    29   2.6  
At5g46270.1 68418.m05696 disease resistance protein (TIR-NBS-LRR...    27   7.9  
At4g27720.1 68417.m03984 expressed protein contains Pfam PF05631...    27   7.9  
At3g60160.1 68416.m06717 ABC transporter family protein similar ...    27   7.9  

>At3g56120.1 68416.m06237 Met-10+ like family protein non-consensus
           TT donor splice site at exon 4 ; contains Pfam profile
           PF02475: Met-10+ like-protein
          Length = 468

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = -3

Query: 248 ETQDLISQVTQEPNPEFNHLTSATTARENVQSFTSN*IKSPRT*QRALGTN*RGNELR 75
           +  DLI     +    F+HL + +T  +N+QS   N         R   TN  G E+R
Sbjct: 262 KVDDLICVHNMDARKFFSHLMAVSTCEDNLQSVADNDKTKEAAVSRGGETNSSGEEIR 319


>At3g51710.1 68416.m05670 curculin-like (mannose-binding) lectin
           family protein / PAN domain-containing protein contains
           Pfam profiles: PF01453 lectin (probable mannose
           binding), PF00024 PAN domain
          Length = 476

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 398 VRNLSLYECQGWCREEPDCQAASFRCGE 481
           VRN+S   C+  C+++ +C AAS+   E
Sbjct: 353 VRNISKERCEELCKKDCECGAASYSVSE 380


>At5g46270.1 68418.m05696 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1145

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/31 (51%), Positives = 16/31 (51%)
 Frame = +2

Query: 359 LTDVDFSGTAYYTVRNLSLYECQGWCREEPD 451
           L DVDFS  A  TV NLS Y       EE D
Sbjct: 886 LWDVDFSDCAALTVVNLSGYPSDTLSEEEDD 916


>At4g27720.1 68417.m03984 expressed protein contains Pfam PF05631:
           Protein of unknown function (DUF791)
          Length = 460

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 469 EGSRLTIRFLSAPALALV*GQVPHGVIRST 380
           EGS  T  FL  PAL+    ++PHG I +T
Sbjct: 260 EGSMYTFVFLWTPALSPNDEEIPHGFIFAT 289


>At3g60160.1 68416.m06717 ABC transporter family protein similar to
           ATP-binding cassette transporter MRP8 GI:18031899 from
           [Arabidopsis thaliana]
          Length = 1490

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 288 LSALLFMLTVLLRRDTGFNLTSHSG-TKP 205
           L A LF+L V +R  TGF+L   SG T+P
Sbjct: 188 LLASLFLLAVSIRGKTGFHLLESSGNTEP 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,912,994
Number of Sequences: 28952
Number of extensions: 245146
Number of successful extensions: 556
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)