Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0856
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    29   0.79 
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    28   1.0  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    25   9.7  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.7  

>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
 Frame = -1

Query: 474 TIYNVVTLYSVLDASFLAFSIA*KLIFMELERLS-MFAARGAVPTAYKFEVNIISFLSSH 298
           T+YN+V L+ V  A  +A S+     F    R+S M+A    +P     + NII FL   
Sbjct: 308 TLYNIV-LFMVAAAKTVAPSVFATFAF----RISVMYAVTRILPA---IQNNII-FLEYS 358

Query: 297 RPSPE*STSILSHCVIHSAFPEIFFATYHP 208
           R S +   SILS C++ + +  +     +P
Sbjct: 359 RTSKQGMWSILSPCILIAVYTNLLLQHLYP 388


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
 Frame = +3

Query: 9   FFFLLSYRQMSIHPPDGEWLPSLMDVSNAR------GRAKPLPTV*YYPQASF 149
           +FF+ S+   S+HP  G +L    +++  R      G+  PL T  YY   +F
Sbjct: 230 YFFMSSFLAGSLHPTAGHFLSEHYNMTRTRLIASGPGKETPLETFSYYGPLNF 282


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = -2

Query: 302 RTARHRSRVHPY*ATASSTVRFQRSFLPRTIRLWNELPSTVFPEH 168
           +T+ + ++++      +   R     + RT++ WN   ST  PEH
Sbjct: 406 KTSENITKINGLEFNRACETRLLTCAMDRTVKFWNYEKSTEEPEH 450


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 88 LTSMSDGNHSPSGGCMLICLYDNKKKKK 5
          L +  DG  S  G   + C Y NKKK+K
Sbjct: 11 LGNSDDGLKSTFGDKTVTCFYCNKKKEK 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,605
Number of Sequences: 5004
Number of extensions: 59520
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)