Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0856
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0022 - 9716537-9716649,9716709-9716826,9716958-9717076,971...    29   2.5  
12_02_0843 + 23593765-23593961,23594474-23594537                       29   3.3  
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707...    29   4.4  
08_01_0139 + 1105857-1107008,1107124-1107328,1107583-1107768,110...    28   5.8  
04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178           28   5.8  

>10_06_0022 -
           9716537-9716649,9716709-9716826,9716958-9717076,
           9717238-9717476,9717793-9717849,9717933-9718019,
           9718185-9718729,9718836-9719102
          Length = 514

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = -1

Query: 459 VTLYSVLDASFLAFSIA*KLIFMELERLSMFAARGAVPTAYKF-EVNIISFLSSHRPSPE 283
           V L    + ++  FSI     F EL R +  A   A+    ++    I+  LS   P+P+
Sbjct: 235 VRLSGACETTWTGFSID---AFRELRRFTELAVPSAMMVCLEWWSFEILVLLSGILPNPQ 291

Query: 282 *STSILSHCVIHSA 241
             TS+LS C+  S+
Sbjct: 292 LETSVLSICLSTSS 305


>12_02_0843 + 23593765-23593961,23594474-23594537
          Length = 86

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 444 HCTTLQHCKWSSFEIRVPKAKKH 512
           HCT L  C W+S E++ P   K+
Sbjct: 30  HCTILLLCSWTSLELKTPNDFKN 52


>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
            27771407-27771773,27772104-27772217,27772307-27772403,
            27772968-27773088,27773168-27773252,27773349-27773498,
            27773630-27773746,27773819-27773905,27773981-27774049,
            27774125-27774181,27774266-27774349,27774477-27774513,
            27774721-27774869,27776053-27776538,27776743-27776886,
            27776961-27777509,27778332-27778526,27779226-27779310,
            27779570-27779670,27779689-27780360,27781101-27781433,
            27781957-27782038,27782258-27782334,27782713-27782817,
            27783810-27783944,27784437-27785159,27785882-27786663,
            27787480-27789187
          Length = 2891

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
 Frame = -3

Query: 244  CVSRDLFCHVPSGFGMSSLPRCFPSTMACPSSNEACG*Y*TVGSGLA-----LPLALLTS 80
            C SR L   VPS   +SS      S   C S NE      +  S L+     LPL +LTS
Sbjct: 1262 CTSRSLDSAVPSASMVSSAAS--RSNSLCRSGNEPMDAGTSRRSSLSTDAGGLPLDVLTS 1319

Query: 79   MSDGNHSPSGGCM 41
            M+D N   S   M
Sbjct: 1320 MADSNGQISAAVM 1332


>08_01_0139 +
           1105857-1107008,1107124-1107328,1107583-1107768,
           1107924-1108133,1108552-1109186
          Length = 795

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -3

Query: 220 HVPSGFGMSSLPRCFPSTMACPSS--NEACG 134
           H P G G +S  R F +++ C SS  N+ CG
Sbjct: 189 HGPHGIGKTSAARIFAASLNCHSSGGNQPCG 219


>04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178
          Length = 455

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 43  YTHLMVNGYRRSWTSAMPEAEPS--RCLPFNTIHKPRLKK 156
           YT  +V+G R +W SAM E   S  +   +  +H P+ KK
Sbjct: 21  YTEAVVSGDRENWISAMQEEMQSLEKNGTWKLVHLPKQKK 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,916,738
Number of Sequences: 37544
Number of extensions: 424124
Number of successful extensions: 977
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)