BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0856 (663 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z74029-7|CAA98430.2| 280|Caenorhabditis elegans Hypothetical pr... 31 0.96 Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr... 29 2.9 U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr... 27 9.0 U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr... 27 9.0 >Z74029-7|CAA98430.2| 280|Caenorhabditis elegans Hypothetical protein C45B11.2 protein. Length = 280 Score = 30.7 bits (66), Expect = 0.96 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 4/37 (10%) Frame = -2 Query: 392 WSWNVCLCLPLGALFQ----LHTNLRLTSSRFYHRTA 294 +SW VC+C PL F+ + T LT YHRT+ Sbjct: 105 FSWPVCICEPLSETFENFYAIRTFHYLTGGNEYHRTS 141 >Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical protein W05B2.4 protein. Length = 2265 Score = 29.1 bits (62), Expect = 2.9 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = -2 Query: 257 ASSTVRFQRSFLPRTIRLWNELPSTVFPEHYGM 159 AS F R FL T + N+LP+ + EH G+ Sbjct: 1221 ASQVTSFPRLFLSSTDEIKNQLPTNIAVEHLGV 1253 >U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical protein C30G12.6a protein. Length = 1100 Score = 27.5 bits (58), Expect = 9.0 Identities = 15/39 (38%), Positives = 18/39 (46%) Frame = +1 Query: 70 RRSWTSAMPEAEPSRCLPFNTIHKPRLKKDMP*CSGNTV 186 RR +T AEP+ F+ HK K M C NTV Sbjct: 107 RRVFTEVTYRAEPAAIALFDVAHKIIFKSTMLDCKRNTV 145 >U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical protein C30G12.6b protein. Length = 1097 Score = 27.5 bits (58), Expect = 9.0 Identities = 15/39 (38%), Positives = 18/39 (46%) Frame = +1 Query: 70 RRSWTSAMPEAEPSRCLPFNTIHKPRLKKDMP*CSGNTV 186 RR +T AEP+ F+ HK K M C NTV Sbjct: 107 RRVFTEVTYRAEPAAIALFDVAHKIIFKSTMLDCKRNTV 145 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,697,617 Number of Sequences: 27780 Number of extensions: 343910 Number of successful extensions: 741 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 729 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 741 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1486926498 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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