Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0856
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74029-7|CAA98430.2|  280|Caenorhabditis elegans Hypothetical pr...    31   0.96 
Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr...    27   9.0  
U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>Z74029-7|CAA98430.2|  280|Caenorhabditis elegans Hypothetical
           protein C45B11.2 protein.
          Length = 280

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = -2

Query: 392 WSWNVCLCLPLGALFQ----LHTNLRLTSSRFYHRTA 294
           +SW VC+C PL   F+    + T   LT    YHRT+
Sbjct: 105 FSWPVCICEPLSETFENFYAIRTFHYLTGGNEYHRTS 141


>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical protein
            W05B2.4 protein.
          Length = 2265

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 257  ASSTVRFQRSFLPRTIRLWNELPSTVFPEHYGM 159
            AS    F R FL  T  + N+LP+ +  EH G+
Sbjct: 1221 ASQVTSFPRLFLSSTDEIKNQLPTNIAVEHLGV 1253


>U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical
           protein C30G12.6a protein.
          Length = 1100

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +1

Query: 70  RRSWTSAMPEAEPSRCLPFNTIHKPRLKKDMP*CSGNTV 186
           RR +T     AEP+    F+  HK   K  M  C  NTV
Sbjct: 107 RRVFTEVTYRAEPAAIALFDVAHKIIFKSTMLDCKRNTV 145


>U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical
           protein C30G12.6b protein.
          Length = 1097

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +1

Query: 70  RRSWTSAMPEAEPSRCLPFNTIHKPRLKKDMP*CSGNTV 186
           RR +T     AEP+    F+  HK   K  M  C  NTV
Sbjct: 107 RRVFTEVTYRAEPAAIALFDVAHKIIFKSTMLDCKRNTV 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,697,617
Number of Sequences: 27780
Number of extensions: 343910
Number of successful extensions: 741
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)