Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0856
         (663 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   4.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.5  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   7.9  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   7.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   7.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.9  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 565 PDYTREVGEEGSMPTFMLCFLALGTRISKLDHL 467
           P  T+ + E G +   +LC   LGT    L H+
Sbjct: 84  PGDTKVMVEHGELVMGILCKKTLGTSAGSLLHI 116


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 48  PPDGEWLPSLMDVSNARG 101
           PPD  W P ++  +NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 206 AGWYVAKKISGNALWMTQWLSMDV 277
           A W V K      LW + WL++DV
Sbjct: 123 ATWEVFKVWIFGDLWCSIWLAVDV 146


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 374 LCLPLGALFQLHTNLRLTSSRF 309
           +C P   +F LH N  +T  RF
Sbjct: 147 ICRPKIHVFSLHDNKLITMYRF 168


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 231 SLETHCG*RSGLVWM 275
           S + +CG R+GL W+
Sbjct: 683 SRDLYCGIRAGLSWL 697


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 231 SLETHCG*RSGLVWM 275
           S + +CG R+GL W+
Sbjct: 721 SRDLYCGIRAGLSWL 735


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 248 WMTQWLSMDVLYS 286
           W   W S+DVL+S
Sbjct: 118 WCDVWRSLDVLFS 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,254
Number of Sequences: 438
Number of extensions: 4560
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)