Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0856
         (663 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51800.1 68414.m05837 leucine-rich repeat protein kinase, put...    31   0.68 
At2g48050.1 68415.m06014 expressed protein ; expression supporte...    30   1.6  
At3g05250.1 68416.m00573 zinc finger (C3HC4-type RING finger) fa...    28   4.8  
At5g19130.2 68418.m02277 GPI transamidase component family prote...    27   8.4  
At5g19130.1 68418.m02276 GPI transamidase component family prote...    27   8.4  

>At1g51800.1 68414.m05837 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 894

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -1

Query: 72  TVTIHHQVGVCSS-ACTTIKKKKKN 1
           T++I    G+CSS +C T KKKKKN
Sbjct: 486 TLSIEGNTGLCSSTSCATTKKKKKN 510


>At2g48050.1 68415.m06014 expressed protein ; expression supported by
            MPSS
          Length = 1500

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 6    FFFFLLSYRQMSIHPPDGEWLPSLMDVS--NARGRAKPLPTV 125
            F  ++ +  Q SI   DG+W+PS    S  NARG  K L  +
Sbjct: 1093 FLIYIFTLIQSSITVKDGDWVPSADFTSRRNARGSQKDLTRI 1134


>At3g05250.1 68416.m00573 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 278

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 69  VTIHHQVGVCSSACTTIKKKKK 4
           + +HH VGV  S C  IK+++K
Sbjct: 160 IVLHHLVGVMESFCKRIKQRRK 181


>At5g19130.2 68418.m02277 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 696

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
 Frame = +2

Query: 212 WYVAKKISGN----ALWMTQWLSMDVLYSGDGRCDDKNEMMLTSNLYAVGT--APLAANI 373
           W VA    G+    A W+T++ S     S   +CD++N      N    GT  A L   +
Sbjct: 214 WLVADSRYGDYRPVAAWLTEYHSPSFKVSDLLKCDEQN---TADNFRRAGTMAAALVLKV 270

Query: 374 DKRSNSIK--INFYAIENAKKLASSTLYNV 457
           D RS   +  ++ YA  +  ++ +  L NV
Sbjct: 271 DGRSEKFEDTLSIYAEASNGQMPNLDLINV 300


>At5g19130.1 68418.m02276 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 699

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
 Frame = +2

Query: 212 WYVAKKISGN----ALWMTQWLSMDVLYSGDGRCDDKNEMMLTSNLYAVGT--APLAANI 373
           W VA    G+    A W+T++ S     S   +CD++N      N    GT  A L   +
Sbjct: 217 WLVADSRYGDYRPVAAWLTEYHSPSFKVSDLLKCDEQN---TADNFRRAGTMAAALVLKV 273

Query: 374 DKRSNSIK--INFYAIENAKKLASSTLYNV 457
           D RS   +  ++ YA  +  ++ +  L NV
Sbjct: 274 DGRSEKFEDTLSIYAEASNGQMPNLDLINV 303


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,824,404
Number of Sequences: 28952
Number of extensions: 323058
Number of successful extensions: 776
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)