Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0855
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 175 4e-45
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 83 5e-17
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 77 2e-15
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 75 7e-15
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 69 5e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 53 4e-08
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 52 7e-08
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 49 5e-07
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 37 0.002
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.4
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 26 4.2
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 26 4.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.5
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 5.5
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|... 25 7.3
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 7.3
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo... 25 7.3
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 7.3
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 25 9.6
SPAC25G10.05c |his1||ATP phosphoribosyltransferase |Schizosaccha... 25 9.6
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 25 9.6
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 9.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 175 bits (427), Expect = 4e-45
Identities = 89/128 (69%), Positives = 100/128 (78%), Gaps = 3/128 (2%)
Frame = -2
Query: 645 GNERFRCPEALFQPSFFGYGSLRHPRDHI*LHHEVRRGHP*---GLVRHTVLSGGTTMYP 475
GNERFR PEALFQPS G L + H ++ + + L + V+SGGTTMYP
Sbjct: 251 GNERFRAPEALFQPSALG---LENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYP 307
Query: 474 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 295
GIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP
Sbjct: 308 GIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 367
Query: 294 SIVHRKCF 271
IV+RKCF
Sbjct: 368 GIVYRKCF 375
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 82.6 bits (195), Expect = 5e-17
Identities = 51/128 (39%), Positives = 70/128 (54%), Gaps = 11/128 (8%)
Frame = -2
Query: 648 FGNERFRCPEALFQPSFFGYGSLRH--PRDHI*LHHEVRRGH-------P*GLVRHTVLS 496
FG ERFR E LF PSF S P+ + LH V + L+ + V++
Sbjct: 291 FGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVT 350
Query: 495 GGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLSTFQQMWIS 322
GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL FQ +W+S
Sbjct: 351 GGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVS 410
Query: 321 KQEYDESG 298
KQEYDE G
Sbjct: 411 KQEYDEVG 418
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 77.0 bits (181), Expect = 2e-15
Identities = 46/128 (35%), Positives = 71/128 (55%), Gaps = 3/128 (2%)
Frame = -2
Query: 645 GNERFRCPEALFQPSFFGYGSLRHPRDHI*LHHEVRRGH---P*GLVRHTVLSGGTTMYP 475
G E F PE LF P G + HI L + L + VLSGG+T+
Sbjct: 256 GTECFSAPEVLFNPEMMGSEASGL---HIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLR 312
Query: 474 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 295
G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +EY ++
Sbjct: 313 GFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQ 371
Query: 294 SIVHRKCF 271
+++ R+ F
Sbjct: 372 NVIFRRRF 379
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -3
Query: 608 NPRSLGMEACGIHETTYNSIMKCDVDIRKDLYA 510
NP +G EA G+H + SI+ D+D+R LY+
Sbjct: 268 NPEMMGSEASGLHIQLFKSILLSDIDLRSTLYS 300
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 75.4 bits (177), Expect = 7e-15
Identities = 36/88 (40%), Positives = 60/88 (68%), Gaps = 6/88 (6%)
Frame = -2
Query: 519 LVRHTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 349
L+ + ++ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL
Sbjct: 346 LLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSL 404
Query: 348 STFQQMWISKQEYDESGP---SIVHRKC 274
TF Q+WIS+QEY+E G +++ ++C
Sbjct: 405 GTFHQLWISRQEYEEHGSDRLALIEKRC 432
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 644 ETKDSVAQRLSSNPRSLGMEACGIHETTYNSIMKCDVDIRKDL 516
+T+++ + S+ + GI + N I +CDVDIR L
Sbjct: 304 QTENNEVSQQDSSVTNTSSRILGIPQLFQNCISECDVDIRASL 346
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 69.3 bits (162), Expect = 5e-13
Identities = 49/131 (37%), Positives = 71/131 (54%), Gaps = 15/131 (11%)
Frame = -2
Query: 645 GNERFRCPEALFQPSFFGY---GSLRHPRDHI*LHHEVRRGHP*GLVRHTVLSGGTTMYP 475
G+ER+ CPE LFQP G G D I R + L R VLSGG++MY
Sbjct: 251 GSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKY---LYRAIVLSGGSSMYA 307
Query: 474 GIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSILAS-LSTFQQM 331
G+ R++KEI L P+ + K+KI P R+++V+IGG++LA ++ M
Sbjct: 308 GLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHM 367
Query: 330 WISKQEYDESG 298
W+SK E++E G
Sbjct: 368 WVSKAEWEEYG 378
Score = 31.1 bits (67), Expect = 0.15
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 605 PRSLGMEACGIHETTYNSIMKCDVDIRKDLY 513
P +G E G+ E +++I DVDIRK LY
Sbjct: 264 PHLVGSEQPGLSEFIFDTIQAADVDIRKYLY 294
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 52.8 bits (121), Expect = 4e-08
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Frame = -2
Query: 639 ERFRCPEALFQPSFFGY---GSLRHPRDHI*LHHEVRRGHP*GLVRHTVLSGGTTMYPGI 469
E+ R PE +F PS G G L R I H + LV + +++GG PG+
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRS-ILQRHSLEEQQK--LVSNVLITGGLGSLPGM 650
Query: 468 ADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 289
R+++E+T++ P I + W G S + F+ ++++EY E GP
Sbjct: 651 ETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEY 710
Query: 288 V 286
+
Sbjct: 711 I 711
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 52.0 bits (119), Expect = 7e-08
Identities = 35/122 (28%), Positives = 53/122 (43%)
Frame = -2
Query: 642 NERFRCPEALFQPSFFGYGSLRHPRDHI*LHHEVRRGHP*GLVRHTVLSGGTTMYPGIAD 463
NERF PE LF PS P + L+ + V GG +PG
Sbjct: 278 NERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHK 337
Query: 462 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 283
R+ E+ +LAP+ ++K+ P + W S + L + I++ EY E G +I+
Sbjct: 338 RLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIMT 396
Query: 282 RK 277
RK
Sbjct: 397 RK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 49.2 bits (112), Expect = 5e-07
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 18/140 (12%)
Frame = -2
Query: 645 GNERFRCPEALFQPSFFGYGSLRHPRDHI*LHHEVRRGHP*----GLVRHTVLSGGTTMY 478
G ERF PE F P L + L V + P GL ++ VLSGG+T++
Sbjct: 283 GFERFLAPEIFFNPEIASSDFLTPLPE---LVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339
Query: 477 PGIADRMQKEITALAPSTMK--------------IKIIAPPERKYSVWIGGSILASLSTF 340
+R+Q+++ + + + +I+ ++ +VW GGS+LA F
Sbjct: 340 KNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEF 399
Query: 339 QQMWISKQEYDESGPSIVHR 280
+K +Y+E G SI R
Sbjct: 400 GSYCHTKADYEEYGASIARR 419
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = -2
Query: 504 VLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQ 334
++ GG +PG A +++ I + + I +I PP + ++ W G I + +
Sbjct: 534 LIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSE 593
Query: 333 MWISKQEYDESGPSIVHRK 277
+WI ++ G ++ K
Sbjct: 594 LWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -2
Query: 378 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 277
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 603 SFFGYGSLRHPRDHI*LHHEVRRG 532
S +GY +L HPR+ I + + RG
Sbjct: 470 SLYGYSTLLHPRNPICVRQRIGRG 493
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 532 TSVRTCTP-HRIVRWYHHVPWNRRPYAKGN 446
TS ++ TP H ++R Y WN++ KG+
Sbjct: 548 TSCKSQTPEHAVIRLYETQSWNQQQVLKGH 577
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 386 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 291
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 453 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 343
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Frame = -2
Query: 528 P*GLVRHTVLSGGTTMYPGIADRMQKEI--------TALAPSTMKIKIIAPPERKYSVW 376
P G ++V +GG+ +PGI + I + P +M ++I+ P + + + W
Sbjct: 405 PTGSTAYSVAAGGSLCHPGIPAILISAICPHSLSFRPIILPDSMTLRIVVPLDARSNAW 463
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 7.3
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -1
Query: 496 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 317
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 316 GV 311
V
Sbjct: 534 AV 535
>SPBC14C8.05c
|meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 450
Score = 25.4 bits (53), Expect = 7.3
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 590 YPKNEGWKRASGQ 628
YP N+GWK+A G+
Sbjct: 309 YPVNQGWKQAMGR 321
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 7.3
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Frame = -1
Query: 373 RWIDPRLPLYLPTDVDLETGVRRVWPLHCTQEVL----LNAPRVLPP 245
+W+D YLP V L TG W + C L L R+LPP
Sbjct: 629 KWMD-----YLPRPVILVTGSIHFWSIACDDGSLHLYSLTGSRLLPP 670
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 9.6
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = -3
Query: 575 IHETTYNSIMKCDVDIRKDLYATP 504
++ + + I KCD D+ ++LY+ P
Sbjct: 7 LNSVSSSEIEKCDEDVEEELYSYP 30
>SPAC25G10.05c |his1||ATP phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 463 VGDSRVHGGTTGQYGVAYKSLRMSTSHFMMEL 558
VG RVH G TGQ +A LR+ + EL
Sbjct: 66 VGTGRVHLGITGQDQIAEARLRIGDKLKIEEL 97
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.0 bits (52), Expect = 9.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -3
Query: 551 IMKCDVDIRKDLYATPYCPVV 489
+ C V++R ++YA CP+V
Sbjct: 478 LFACPVELRPEVYARMLCPLV 498
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 319 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 405
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,774,096
Number of Sequences: 5004
Number of extensions: 57928
Number of successful extensions: 186
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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