Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0855
(658 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 189 2e-48
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 189 2e-48
SB_56| Best HMM Match : Actin (HMM E-Value=0) 189 2e-48
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 188 3e-48
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 187 6e-48
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 187 8e-48
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 167 9e-42
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 58 5e-09
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 54 8e-08
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_54| Best HMM Match : Actin (HMM E-Value=0) 40 0.002
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_18737| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 189 bits (460), Expect = 2e-48
Identities = 96/129 (74%), Positives = 105/129 (81%), Gaps = 4/129 (3%)
Frame = -2
Query: 645 GNERFRCPEALFQPSFFGYGSLR-HPRDHI*LHH---EVRRGHP*GLVRHTVLSGGTTMY 478
GNERFRCPEA+FQPSF G S H + + ++R+ L +TVLSGGTTMY
Sbjct: 214 GNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKD----LYANTVLSGGTTMY 269
Query: 477 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 298
PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG
Sbjct: 270 PGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 329
Query: 297 PSIVHRKCF 271
P+IVHRKCF
Sbjct: 330 PAIVHRKCF 338
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 189 bits (460), Expect = 2e-48
Identities = 96/129 (74%), Positives = 105/129 (81%), Gaps = 4/129 (3%)
Frame = -2
Query: 645 GNERFRCPEALFQPSFFGYGSLR-HPRDHI*LHH---EVRRGHP*GLVRHTVLSGGTTMY 478
GNERFRCPEA+FQPSF G S H + + ++R+ L +TVLSGG+TMY
Sbjct: 252 GNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKD----LYANTVLSGGSTMY 307
Query: 477 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 298
PGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG
Sbjct: 308 PGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 367
Query: 297 PSIVHRKCF 271
PSIVHRKCF
Sbjct: 368 PSIVHRKCF 376
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 189 bits (460), Expect = 2e-48
Identities = 96/129 (74%), Positives = 105/129 (81%), Gaps = 4/129 (3%)
Frame = -2
Query: 645 GNERFRCPEALFQPSFFGYGSLR-HPRDHI*LHH---EVRRGHP*GLVRHTVLSGGTTMY 478
GNERFRCPEA+FQPSF G S H + + ++R+ L +TVLSGG+TMY
Sbjct: 251 GNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKD----LYANTVLSGGSTMY 306
Query: 477 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 298
PGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG
Sbjct: 307 PGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 366
Query: 297 PSIVHRKCF 271
PSIVHRKCF
Sbjct: 367 PSIVHRKCF 375
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 188 bits (459), Expect = 3e-48
Identities = 96/129 (74%), Positives = 105/129 (81%), Gaps = 4/129 (3%)
Frame = -2
Query: 645 GNERFRCPEALFQPSFFGYGSLR-HPRDHI*LHH---EVRRGHP*GLVRHTVLSGGTTMY 478
GNERFRCPEA+FQPSF G S H + + ++R+ L +TVLSGG+TMY
Sbjct: 252 GNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKD----LYANTVLSGGSTMY 307
Query: 477 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 298
PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG
Sbjct: 308 PGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 367
Query: 297 PSIVHRKCF 271
PSIVHRKCF
Sbjct: 368 PSIVHRKCF 376
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 187 bits (456), Expect = 6e-48
Identities = 95/129 (73%), Positives = 105/129 (81%), Gaps = 4/129 (3%)
Frame = -2
Query: 645 GNERFRCPEALFQPSFFGYGSLR-HPRDHI*LHH---EVRRGHP*GLVRHTVLSGGTTMY 478
GNERFRCPEAL QPSF G S H + + ++R+ L +TV+SGGTTMY
Sbjct: 225 GNERFRCPEALLQPSFLGMESSGIHETTYNSIMKCDVDIRKD----LYANTVMSGGTTMY 280
Query: 477 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 298
PG+ADRMQKEI+ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG
Sbjct: 281 PGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 340
Query: 297 PSIVHRKCF 271
P+IVHRKCF
Sbjct: 341 PAIVHRKCF 349
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 187 bits (455), Expect = 8e-48
Identities = 95/129 (73%), Positives = 105/129 (81%), Gaps = 4/129 (3%)
Frame = -2
Query: 645 GNERFRCPEALFQPSFFGYGSLR-HPRDHI*LHH---EVRRGHP*GLVRHTVLSGGTTMY 478
GNERFRCPEA+FQPSF G S H + + ++R+ L +TVLSGG+TM+
Sbjct: 251 GNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKD----LYANTVLSGGSTMF 306
Query: 477 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 298
PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG
Sbjct: 307 PGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 366
Query: 297 PSIVHRKCF 271
PSIVHRKCF
Sbjct: 367 PSIVHRKCF 375
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 167 bits (405), Expect = 9e-42
Identities = 82/128 (64%), Positives = 99/128 (77%), Gaps = 3/128 (2%)
Frame = -2
Query: 645 GNERFRCPEALFQPSFFGYGSLRHPRDHI*LHHEVRRGHP*---GLVRHTVLSGGTTMYP 475
GNERFRCPEA+FQP+F G + P H +++ + + L + VLSGG+TM+P
Sbjct: 25 GNERFRCPEAMFQPAFLG---MEAPGIHEAIYNCIMKCDVDIRKDLYSNCVLSGGSTMFP 81
Query: 474 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 295
GIADRMQKEI LA ++MK+K+IAPPERKYSVWIGGSILASLSTFQQMWI+K+EY E GP
Sbjct: 82 GIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQQMWIAKEEYHEYGP 141
Query: 294 SIVHRKCF 271
IVHRKCF
Sbjct: 142 PIVHRKCF 149
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 58.4 bits (135), Expect = 5e-09
Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 19/146 (13%)
Frame = -2
Query: 639 ERFRCPEALFQPSFFGYG---SLRHPRDHI*LHHEVRRGHP*GLVRHTVLSGGTTMYPGI 469
ERF PE F P F L D++ + + P L ++ VLSGG+TM+
Sbjct: 201 ERFLGPEIFFHPEFSNPDFTTPLSEVVDNVIQNCPIDVRRP--LYKNIVLSGGSTMFRDF 258
Query: 468 ADRMQKEITA----------------LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQ 337
R+Q++I + P ++ ++I+ ++Y+VW GGS+LAS F
Sbjct: 259 GRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQRYAVWFGGSMLASTPEFY 318
Query: 336 QMWISKQEYDESGPSIVHRKCF*THR 259
+ +K +YDE GPSI F HR
Sbjct: 319 SVCHTKADYDEHGPSICRHNPF-LHR 343
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 54.4 bits (125), Expect = 8e-08
Identities = 23/61 (37%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
Frame = -2
Query: 522 GLVRHTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIA---PPERKYSVWIGGSILAS 352
GL +++GG T+ G +R+ +E+ + P +M++K+I+ E++++ WIGGSILAS
Sbjct: 170 GLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILAS 229
Query: 351 L 349
L
Sbjct: 230 L 230
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 49.6 bits (113), Expect = 2e-06
Identities = 47/146 (32%), Positives = 66/146 (45%), Gaps = 32/146 (21%)
Frame = -2
Query: 639 ERFRCPEALFQPSFF---GYGSLRHPRDHI*LHHEVRRGHP*GLVRHTVLSGGTTMYPGI 469
ERF PEALFQP G G + I R +H VLSGG+TMYPG+
Sbjct: 257 ERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSE---FYKHIVLSGGSTMYPGL 313
Query: 468 A------------DRMQKEITALAPSTM----------------KIKIIAPPERKYSVWI 373
+R+ K T+ S M KI+I PP RK+ V++
Sbjct: 314 PSRLEREIKQLYLERVLKGDTSKLSSGMGMEQIPLTADYLLQKFKIRIEDPPRRKHMVFM 373
Query: 372 GGSILAS-LSTFQQMWISKQEYDESG 298
GG++LA + W++++EY+E G
Sbjct: 374 GGAVLADIMKDKDSFWMTRKEYEEKG 399
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -3
Query: 605 PRSLGMEACGIHETTYNSIMKCDVDIRKDLY 513
P LG + GIHE+ + SI KCD+D+R +L+
Sbjct: 2309 PSLLGRDIDGIHESIFKSIKKCDIDLRAELF 2339
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -2
Query: 645 GNERFRCPEALFQPSFFG 592
G+ERFR E LFQPS G
Sbjct: 2296 GSERFRAAEPLFQPSLLG 2313
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Frame = -2
Query: 519 LVRHTVLSGGTTMYPGIADRMQKEITALAPS--------TMKIKIIAPP-ERKYSVWIGG 367
L + VL GGT M PG R+ +EI L S +K+ PP + W+GG
Sbjct: 77 LAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANITAWLGG 136
Query: 366 SILASLSTFQQMWISKQEYDE 304
+I SL +++ Y +
Sbjct: 137 AIFGSLEVLADRSTTRERYQQ 157
>SB_18737| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 696
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +2
Query: 536 RRTS*WSYMW---SRGCRKLPYPKNEGWKRASGQ 628
+R + +Y+W + + LP P+N GW+ +GQ
Sbjct: 572 KRANYQAYIWRSSTTAMQNLPLPENNGWRNNAGQ 605
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,766,876
Number of Sequences: 59808
Number of extensions: 496976
Number of successful extensions: 1433
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1413
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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