Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0855
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             154   8e-40
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   4.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   4.5  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  154 bits (373), Expect = 8e-40
 Identities = 81/112 (72%), Positives = 89/112 (79%), Gaps = 4/112 (3%)
 Frame = -2

Query: 645 GNERFRCPEALFQPSFFGYGSLR-HPRDHI*LHH---EVRRGHP*GLVRHTVLSGGTTMY 478
           GNERFRCPEALFQPSF G  +   H   +  +     ++R+     L  +TVLSGGTTMY
Sbjct: 26  GNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKD----LYANTVLSGGTTMY 81

Query: 477 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 322
           PGIADRMQKEITALAPSTMKIKIIAPPE+KYSVWIGGSILASLSTFQQMWIS
Sbjct: 82  PGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQMWIS 133



 Score = 68.9 bits (161), Expect = 4e-14
 Identities = 30/32 (93%), Positives = 30/32 (93%)
 Frame = -3

Query: 605 PRSLGMEACGIHETTYNSIMKCDVDIRKDLYA 510
           P  LGMEACGIHETTYNSIMKCDVDIRKDLYA
Sbjct: 39  PSFLGMEACGIHETTYNSIMKCDVDIRKDLYA 70


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
 Frame = -1

Query: 619 GSLPTLVLWV--WKLAASTRPHITPS*SATW-TSVRTCTPHRIVR----WYHHVPWNRRP 461
           GS+ TL   +  + L A+++  I PS    + TS++    +RI +    +YH    +++P
Sbjct: 379 GSIDTLARKILGYNLEAASKYQIVPSALEIFSTSMKDPAFYRIYKRIIDYYHSYKMHQKP 438

Query: 460 YAK 452
           Y K
Sbjct: 439 YNK 441


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
 Frame = -1

Query: 619 GSLPTLVLWV--WKLAASTRPHITPS*SATW-TSVRTCTPHRIVR----WYHHVPWNRRP 461
           GS+ TL   +  + L A+++  I PS    + TS++    +RI +    +YH    +++P
Sbjct: 379 GSIDTLARKILGYNLEAASKYQIVPSALEIFSTSMKDPAFYRIYKRIIDYYHSYKMHQKP 438

Query: 460 YAK 452
           Y K
Sbjct: 439 YNK 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,116
Number of Sequences: 438
Number of extensions: 4610
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)