Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0850
         (694 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q05FS0 Cluster: Tyrosyl-tRNA synthetase; n=1; Candidatu...    36   0.71 
UniRef50_A0CXH9 Cluster: Chromosome undetermined scaffold_30, wh...    34   3.8  
UniRef50_A5FJV1 Cluster: Putative uncharacterized protein; n=1; ...    33   6.6  

>UniRef50_Q05FS0 Cluster: Tyrosyl-tRNA synthetase; n=1; Candidatus
           Carsonella ruddii PV|Rep: Tyrosyl-tRNA synthetase -
           Carsonella ruddii (strain PV)
          Length = 325

 Score = 36.3 bits (80), Expect = 0.71
 Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 3/156 (1%)
 Frame = +3

Query: 186 IFLRLHLFVCGF*ELLNIICNSFDSNKCFYVIIYHQNLLEMHNIVMTLTVQAQTGVFNPK 365
           +FL+    + G  +LLNIIC     +K         N+ + + I + +       +   K
Sbjct: 147 VFLKSGFEIGGLDQLLNIICGRIFQSKF--------NIKKQNIITLKILSINNIKISKSK 198

Query: 366 NKFIALIFRQVYINNTIRKNVFFYWGGNNKYKYFFSI*TNLRLVRV*EYTFYKNMR*SIT 545
           NK +   ++Q+Y N  + K VFF +   NK  Y  +   NL L++  +  F+K     + 
Sbjct: 199 NKHLLNAYKQIY-NFKLLKLVFFNFKNYNKCVYKKTFFLNLVLLKKCKIFFFKKKIYFLN 257

Query: 546 HTLV---FNTLLPKYTLGM*ILVFNRYISHNKLLYV 644
              +   F  +          L++N+ I  NK + +
Sbjct: 258 RNFISFYFKKIFNLKKFNFYKLIYNKNIIINKKILI 293


>UniRef50_A0CXH9 Cluster: Chromosome undetermined scaffold_30, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_30,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 311

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 20/67 (29%), Positives = 36/67 (53%)
 Frame = +3

Query: 276 VIIYHQNLLEMHNIVMTLTVQAQTGVFNPKNKFIALIFRQVYINNTIRKNVFFYWGGNNK 455
           +I+YH   +++HN+ + L V     V   KN+   L+F+Q       R + F+Y    +K
Sbjct: 75  IIVYHFRFIKLHNVHLLLFVCTDRIVVFQKNR---LVFKQKINEPLYRYDNFYY----DK 127

Query: 456 YKYFFSI 476
           Y+++F I
Sbjct: 128 YEHYFII 134


>UniRef50_A5FJV1 Cluster: Putative uncharacterized protein; n=1;
           Flavobacterium johnsoniae UW101|Rep: Putative
           uncharacterized protein - Flavobacterium johnsoniae
           UW101
          Length = 436

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 360 PKNKFIALIFRQVYINNTIRKNV-FFYWGGN 449
           P + + A+++  V INNT   N  ++YWGGN
Sbjct: 377 PSSSYYAMLYGTVIINNTSGANKNYYYWGGN 407


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 544,282,891
Number of Sequences: 1657284
Number of extensions: 9801742
Number of successful extensions: 14431
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14425
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)