BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0850 (694 letters) Database: uniref50 1,657,284 sequences; 575,637,011 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value UniRef50_Q05FS0 Cluster: Tyrosyl-tRNA synthetase; n=1; Candidatu... 36 0.71 UniRef50_A0CXH9 Cluster: Chromosome undetermined scaffold_30, wh... 34 3.8 UniRef50_A5FJV1 Cluster: Putative uncharacterized protein; n=1; ... 33 6.6 >UniRef50_Q05FS0 Cluster: Tyrosyl-tRNA synthetase; n=1; Candidatus Carsonella ruddii PV|Rep: Tyrosyl-tRNA synthetase - Carsonella ruddii (strain PV) Length = 325 Score = 36.3 bits (80), Expect = 0.71 Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 3/156 (1%) Frame = +3 Query: 186 IFLRLHLFVCGF*ELLNIICNSFDSNKCFYVIIYHQNLLEMHNIVMTLTVQAQTGVFNPK 365 +FL+ + G +LLNIIC +K N+ + + I + + + K Sbjct: 147 VFLKSGFEIGGLDQLLNIICGRIFQSKF--------NIKKQNIITLKILSINNIKISKSK 198 Query: 366 NKFIALIFRQVYINNTIRKNVFFYWGGNNKYKYFFSI*TNLRLVRV*EYTFYKNMR*SIT 545 NK + ++Q+Y N + K VFF + NK Y + NL L++ + F+K + Sbjct: 199 NKHLLNAYKQIY-NFKLLKLVFFNFKNYNKCVYKKTFFLNLVLLKKCKIFFFKKKIYFLN 257 Query: 546 HTLV---FNTLLPKYTLGM*ILVFNRYISHNKLLYV 644 + F + L++N+ I NK + + Sbjct: 258 RNFISFYFKKIFNLKKFNFYKLIYNKNIIINKKILI 293 >UniRef50_A0CXH9 Cluster: Chromosome undetermined scaffold_30, whole genome shotgun sequence; n=1; Paramecium tetraurelia|Rep: Chromosome undetermined scaffold_30, whole genome shotgun sequence - Paramecium tetraurelia Length = 311 Score = 33.9 bits (74), Expect = 3.8 Identities = 20/67 (29%), Positives = 36/67 (53%) Frame = +3 Query: 276 VIIYHQNLLEMHNIVMTLTVQAQTGVFNPKNKFIALIFRQVYINNTIRKNVFFYWGGNNK 455 +I+YH +++HN+ + L V V KN+ L+F+Q R + F+Y +K Sbjct: 75 IIVYHFRFIKLHNVHLLLFVCTDRIVVFQKNR---LVFKQKINEPLYRYDNFYY----DK 127 Query: 456 YKYFFSI 476 Y+++F I Sbjct: 128 YEHYFII 134 >UniRef50_A5FJV1 Cluster: Putative uncharacterized protein; n=1; Flavobacterium johnsoniae UW101|Rep: Putative uncharacterized protein - Flavobacterium johnsoniae UW101 Length = 436 Score = 33.1 bits (72), Expect = 6.6 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = +3 Query: 360 PKNKFIALIFRQVYINNTIRKNV-FFYWGGN 449 P + + A+++ V INNT N ++YWGGN Sbjct: 377 PSSSYYAMLYGTVIINNTSGANKNYYYWGGN 407 Database: uniref50 Posted date: Oct 5, 2007 11:19 AM Number of letters in database: 575,637,011 Number of sequences in database: 1,657,284 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 544,282,891 Number of Sequences: 1657284 Number of extensions: 9801742 Number of successful extensions: 14431 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 14014 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 14425 length of database: 575,637,011 effective HSP length: 98 effective length of database: 413,223,179 effective search space used: 54545459628 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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