BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0850 (694 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81463-8|CAB03849.2| 346|Caenorhabditis elegans Hypothetical pr... 29 2.4 Z75526-4|CAA99770.1| 360|Caenorhabditis elegans Hypothetical pr... 28 7.3 EF409995-1|ABN58742.1| 410|Caenorhabditis elegans reduced folat... 28 7.3 AF000261-6|AAB52928.1| 317|Caenorhabditis elegans Serpentine re... 27 9.6 >Z81463-8|CAB03849.2| 346|Caenorhabditis elegans Hypothetical protein C06B8.6 protein. Length = 346 Score = 29.5 bits (63), Expect = 2.4 Identities = 20/83 (24%), Positives = 36/83 (43%) Frame = +3 Query: 363 KNKFIALIFRQVYINNTIRKNVFFYWGGNNKYKYFFSI*TNLRLVRV*EYTFYKNMR*SI 542 +N+F+ I Q+ I + FFY G + + YF TN+ + + + F+ ++ Sbjct: 243 QNRFMKAIILQLLIPSFCLNTPFFYIGFSGAFGYFNQKLTNVSFILIATHGFFSSLFMLF 302 Query: 543 THTLVFNTLLPKYTLGM*ILVFN 611 H +L + IL FN Sbjct: 303 VHASYREAVLECFVKIGRILGFN 325 >Z75526-4|CAA99770.1| 360|Caenorhabditis elegans Hypothetical protein C06H2.4 protein. Length = 360 Score = 27.9 bits (59), Expect = 7.3 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%) Frame = -1 Query: 421 LRIVLLM*TCRKIRAIN--LFFGLKTPVCACTVNVMTILCISSRF 293 LR VL +++ + N L FG T V C +++T++ + SRF Sbjct: 305 LRYVLRANVAKELSSNNHGLIFGCNTFVAVCLQSLLTLVVVDSRF 349 >EF409995-1|ABN58742.1| 410|Caenorhabditis elegans reduced folate carrier protein. Length = 410 Score = 27.9 bits (59), Expect = 7.3 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%) Frame = -1 Query: 421 LRIVLLM*TCRKIRAIN--LFFGLKTPVCACTVNVMTILCISSRF 293 LR VL +++ + N L FG T V C +++T++ + SRF Sbjct: 305 LRYVLRANVAKELSSNNHGLIFGCNTFVAVCLQSLLTLVVVDSRF 349 >AF000261-6|AAB52928.1| 317|Caenorhabditis elegans Serpentine receptor, class x protein97 protein. Length = 317 Score = 27.5 bits (58), Expect = 9.6 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Frame = +3 Query: 363 KNKFIALIFRQ-VYINNTIRKNVFFYWGGNNKYKYFFSI*TNL 488 +N F+ F+ VY+ +TI + W + +++FF+I +NL Sbjct: 235 RNLFLQSCFQDWVYLIDTINSMYIYSWFSDILWQFFFTIFSNL 277 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,270,396 Number of Sequences: 27780 Number of extensions: 254824 Number of successful extensions: 346 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 336 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 346 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1592382278 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -