Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0850
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-8|CAB03849.2|  346|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z75526-4|CAA99770.1|  360|Caenorhabditis elegans Hypothetical pr...    28   7.3  
EF409995-1|ABN58742.1|  410|Caenorhabditis elegans reduced folat...    28   7.3  
AF000261-6|AAB52928.1|  317|Caenorhabditis elegans Serpentine re...    27   9.6  

>Z81463-8|CAB03849.2|  346|Caenorhabditis elegans Hypothetical
           protein C06B8.6 protein.
          Length = 346

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/83 (24%), Positives = 36/83 (43%)
 Frame = +3

Query: 363 KNKFIALIFRQVYINNTIRKNVFFYWGGNNKYKYFFSI*TNLRLVRV*EYTFYKNMR*SI 542
           +N+F+  I  Q+ I +      FFY G +  + YF    TN+  + +  + F+ ++    
Sbjct: 243 QNRFMKAIILQLLIPSFCLNTPFFYIGFSGAFGYFNQKLTNVSFILIATHGFFSSLFMLF 302

Query: 543 THTLVFNTLLPKYTLGM*ILVFN 611
            H      +L  +     IL FN
Sbjct: 303 VHASYREAVLECFVKIGRILGFN 325


>Z75526-4|CAA99770.1|  360|Caenorhabditis elegans Hypothetical
           protein C06H2.4 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -1

Query: 421 LRIVLLM*TCRKIRAIN--LFFGLKTPVCACTVNVMTILCISSRF 293
           LR VL     +++ + N  L FG  T V  C  +++T++ + SRF
Sbjct: 305 LRYVLRANVAKELSSNNHGLIFGCNTFVAVCLQSLLTLVVVDSRF 349


>EF409995-1|ABN58742.1|  410|Caenorhabditis elegans reduced folate
           carrier protein.
          Length = 410

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -1

Query: 421 LRIVLLM*TCRKIRAIN--LFFGLKTPVCACTVNVMTILCISSRF 293
           LR VL     +++ + N  L FG  T V  C  +++T++ + SRF
Sbjct: 305 LRYVLRANVAKELSSNNHGLIFGCNTFVAVCLQSLLTLVVVDSRF 349


>AF000261-6|AAB52928.1|  317|Caenorhabditis elegans Serpentine
           receptor, class x protein97 protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 363 KNKFIALIFRQ-VYINNTIRKNVFFYWGGNNKYKYFFSI*TNL 488
           +N F+   F+  VY+ +TI     + W  +  +++FF+I +NL
Sbjct: 235 RNLFLQSCFQDWVYLIDTINSMYIYSWFSDILWQFFFTIFSNL 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,270,396
Number of Sequences: 27780
Number of extensions: 254824
Number of successful extensions: 346
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)