Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0846
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244...    29   2.7  
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557...    29   2.7  
03_02_0942 - 12595108-12595347,12596227-12596362,12596917-12597083     29   2.7  
08_01_0038 - 282431-283954                                             29   3.5  
04_04_1652 - 35066814-35067659                                         29   4.7  
09_04_0631 - 19114785-19114825,19114911-19114995,19115092-191152...    28   6.2  

>11_06_0294 +
           22022630-22024006,22024109-22024234,22024319-22024423,
           22024525-22024659,22024798-22024847,22026487-22026545,
           22026819-22026928,22027941-22028174,22028278-22028377,
           22028699-22028829,22029834-22029914,22029970-22030128
          Length = 888

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +2

Query: 248 PCTHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLKFAL 382
           P    PF SW N  +A  D+ +  L  LNG    +   + LK  L
Sbjct: 402 PSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 446


>11_06_0278 -
           21854859-21855101,21855529-21855587,21855684-21855711,
           21855812-21856702,21856792-21857011,21857638-21857687,
           21863174-21863284,21863379-21863483,21863568-21863693,
           21863796-21865187
          Length = 1074

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +2

Query: 248 PCTHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLKFAL 382
           P    PF SW N  +A  D+ +  L  LNG    +   + LK  L
Sbjct: 407 PSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 451


>03_02_0942 - 12595108-12595347,12596227-12596362,12596917-12597083
          Length = 180

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 510 ERGLQRQRAKNRLSGRWPHYVNHHPNQSF 596
           E    RQR  +R SGRW    NH  N +F
Sbjct: 112 ETARNRQRVSHRRSGRWRWMQNHDNNTTF 140


>08_01_0038 - 282431-283954
          Length = 507

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
 Frame = +1

Query: 310 FPTVAQ-PEWRMANCKR*YFVKIRVKFLLNQLIF*PIGRNRQNPL*IKRIDRDRVECCSS 486
           FP++A+ P  R   C + Y VK R   LL+QLI     + R + L     + D ++   S
Sbjct: 227 FPSLARLPVVRRLLCAKAYHVKRRWDQLLDQLIDDHASKRRSSMLDNNDEESDFIDVLLS 286

Query: 487 LEQE--STIKNVDSNV 528
           ++QE   T  N+ +N+
Sbjct: 287 IQQEYGLTKDNIKANL 302


>04_04_1652 - 35066814-35067659
          Length = 281

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +2

Query: 482 PVWNKSPLLRTWTPTSKGEKPSIRAMAPLREP 577
           P W+  PLLR  TP+S  E  +  AM  +REP
Sbjct: 196 PFWSAQPLLRQGTPSSCPECEAAAAM--MREP 225


>09_04_0631 -
           19114785-19114825,19114911-19114995,19115092-19115286,
           19115372-19115446,19115530-19115598,19115693-19115758,
           19115847-19116062,19116155-19116508
          Length = 366

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -2

Query: 340 FAIQAAQLLGRAIGAGLFAITPAG--ERGMCARRLSWVT 230
           FA +AA+L G   GAGLF +   G  ERG C+R  S V+
Sbjct: 40  FAERAARLCGG--GAGLFGLPAVGNAERGGCSREGSSVS 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,196,200
Number of Sequences: 37544
Number of extensions: 491973
Number of successful extensions: 1211
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)