BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0846 (698 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244... 29 2.7 11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557... 29 2.7 03_02_0942 - 12595108-12595347,12596227-12596362,12596917-12597083 29 2.7 08_01_0038 - 282431-283954 29 3.5 04_04_1652 - 35066814-35067659 29 4.7 09_04_0631 - 19114785-19114825,19114911-19114995,19115092-191152... 28 6.2 >11_06_0294 + 22022630-22024006,22024109-22024234,22024319-22024423, 22024525-22024659,22024798-22024847,22026487-22026545, 22026819-22026928,22027941-22028174,22028278-22028377, 22028699-22028829,22029834-22029914,22029970-22030128 Length = 888 Score = 29.5 bits (63), Expect = 2.7 Identities = 15/45 (33%), Positives = 20/45 (44%) Frame = +2 Query: 248 PCTHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLKFAL 382 P PF SW N +A D+ + L LNG + + LK L Sbjct: 402 PSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 446 >11_06_0278 - 21854859-21855101,21855529-21855587,21855684-21855711, 21855812-21856702,21856792-21857011,21857638-21857687, 21863174-21863284,21863379-21863483,21863568-21863693, 21863796-21865187 Length = 1074 Score = 29.5 bits (63), Expect = 2.7 Identities = 15/45 (33%), Positives = 20/45 (44%) Frame = +2 Query: 248 PCTHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLKFAL 382 P PF SW N +A D+ + L LNG + + LK L Sbjct: 407 PSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 451 >03_02_0942 - 12595108-12595347,12596227-12596362,12596917-12597083 Length = 180 Score = 29.5 bits (63), Expect = 2.7 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = +3 Query: 510 ERGLQRQRAKNRLSGRWPHYVNHHPNQSF 596 E RQR +R SGRW NH N +F Sbjct: 112 ETARNRQRVSHRRSGRWRWMQNHDNNTTF 140 >08_01_0038 - 282431-283954 Length = 507 Score = 29.1 bits (62), Expect = 3.5 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%) Frame = +1 Query: 310 FPTVAQ-PEWRMANCKR*YFVKIRVKFLLNQLIF*PIGRNRQNPL*IKRIDRDRVECCSS 486 FP++A+ P R C + Y VK R LL+QLI + R + L + D ++ S Sbjct: 227 FPSLARLPVVRRLLCAKAYHVKRRWDQLLDQLIDDHASKRRSSMLDNNDEESDFIDVLLS 286 Query: 487 LEQE--STIKNVDSNV 528 ++QE T N+ +N+ Sbjct: 287 IQQEYGLTKDNIKANL 302 >04_04_1652 - 35066814-35067659 Length = 281 Score = 28.7 bits (61), Expect = 4.7 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = +2 Query: 482 PVWNKSPLLRTWTPTSKGEKPSIRAMAPLREP 577 P W+ PLLR TP+S E + AM +REP Sbjct: 196 PFWSAQPLLRQGTPSSCPECEAAAAM--MREP 225 >09_04_0631 - 19114785-19114825,19114911-19114995,19115092-19115286, 19115372-19115446,19115530-19115598,19115693-19115758, 19115847-19116062,19116155-19116508 Length = 366 Score = 28.3 bits (60), Expect = 6.2 Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 2/39 (5%) Frame = -2 Query: 340 FAIQAAQLLGRAIGAGLFAITPAG--ERGMCARRLSWVT 230 FA +AA+L G GAGLF + G ERG C+R S V+ Sbjct: 40 FAERAARLCGG--GAGLFGLPAVGNAERGGCSREGSSVS 76 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,196,200 Number of Sequences: 37544 Number of extensions: 491973 Number of successful extensions: 1211 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 1177 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1211 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1792053856 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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