BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0846 (698 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g18960.1 68416.m02407 transcriptional factor B3 family protei... 29 3.0 At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 29 3.0 At5g21080.1 68418.m02510 expressed protein predicted proteins - ... 29 3.9 At5g02460.1 68418.m00173 Dof-type zinc finger domain-containing ... 27 9.0 >At3g18960.1 68416.m02407 transcriptional factor B3 family protein contains Pfam profile PF02362: B3 DNA binding domain Length = 209 Score = 29.1 bits (62), Expect = 3.0 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Frame = +2 Query: 518 TPTSKGEKPSIRAMAPLREP-SP*SKFFGVEVP*STKSEPLKGSPRF*SLTGKSRANV 688 T +K S+ ++P SP KFF + +P + K + +K PRF L G + V Sbjct: 4 TQNTKARVTSVSHRRSQQDPESPVKKFFKLVLPSTMKDKMMKIPPRFVKLQGSKLSEV 61 >At2g45000.1 68415.m05603 expressed protein contains Pfam profile: PF05064 Nsp1-like C-terminal region Length = 739 Score = 29.1 bits (62), Expect = 3.0 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = -3 Query: 579 DGSRSGAIALIDGFSPFDVGVHVLNSGL 496 + ++ G + IDG SP DV V +LN+ L Sbjct: 673 NANQGGELEAIDGMSPLDVVVRILNNQL 700 >At5g21080.1 68418.m02510 expressed protein predicted proteins - Arabidopsis thaliana; expression supported by MPSS Length = 980 Score = 28.7 bits (61), Expect = 3.9 Identities = 24/55 (43%), Positives = 30/55 (54%) Frame = -1 Query: 599 QKTLIRVMVHVVGPSP**TVFRPLTLESTFLIVDSCSKLEQHSTLSRSILLIYKG 435 Q+TL R V V S +FR L LES VD +K+E+ STLSRS +G Sbjct: 507 QRTLSRT-VSVFSSSA--ALFRKLKLESDNS-VDDTAKMERVSTLSRSTSKFIRG 557 >At5g02460.1 68418.m00173 Dof-type zinc finger domain-containing protein zinc finger protein OBP3, Arabidopsis thaliana, EMBL:AF155818 Length = 399 Score = 27.5 bits (58), Expect = 9.0 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = -3 Query: 645 LPFRGSDLVLYGTSTPKNFD*GDGSRSGAIALIDGF 538 L F + + YG + ++ G GS GA AL++GF Sbjct: 237 LDFTDNFTLQYGAVSAPSYHIGGGSSGGAAALLNGF 272 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,579,757 Number of Sequences: 28952 Number of extensions: 372225 Number of successful extensions: 857 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 842 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 857 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1496852856 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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