Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0846
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18960.1 68416.m02407 transcriptional factor B3 family protei...    29   3.0  
At2g45000.1 68415.m05603 expressed protein contains Pfam profile...    29   3.0  
At5g21080.1 68418.m02510 expressed protein predicted proteins - ...    29   3.9  
At5g02460.1 68418.m00173 Dof-type zinc finger domain-containing ...    27   9.0  

>At3g18960.1 68416.m02407 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 209

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 518 TPTSKGEKPSIRAMAPLREP-SP*SKFFGVEVP*STKSEPLKGSPRF*SLTGKSRANV 688
           T  +K    S+      ++P SP  KFF + +P + K + +K  PRF  L G   + V
Sbjct: 4   TQNTKARVTSVSHRRSQQDPESPVKKFFKLVLPSTMKDKMMKIPPRFVKLQGSKLSEV 61


>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
           PF05064 Nsp1-like C-terminal region
          Length = 739

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 579 DGSRSGAIALIDGFSPFDVGVHVLNSGL 496
           + ++ G +  IDG SP DV V +LN+ L
Sbjct: 673 NANQGGELEAIDGMSPLDVVVRILNNQL 700


>At5g21080.1 68418.m02510 expressed protein predicted proteins -
           Arabidopsis thaliana; expression supported by MPSS
          Length = 980

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 24/55 (43%), Positives = 30/55 (54%)
 Frame = -1

Query: 599 QKTLIRVMVHVVGPSP**TVFRPLTLESTFLIVDSCSKLEQHSTLSRSILLIYKG 435
           Q+TL R  V V   S    +FR L LES    VD  +K+E+ STLSRS     +G
Sbjct: 507 QRTLSRT-VSVFSSSA--ALFRKLKLESDNS-VDDTAKMERVSTLSRSTSKFIRG 557


>At5g02460.1 68418.m00173 Dof-type zinc finger domain-containing
           protein zinc finger protein OBP3, Arabidopsis thaliana,
           EMBL:AF155818
          Length = 399

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 645 LPFRGSDLVLYGTSTPKNFD*GDGSRSGAIALIDGF 538
           L F  +  + YG  +  ++  G GS  GA AL++GF
Sbjct: 237 LDFTDNFTLQYGAVSAPSYHIGGGSSGGAAALLNGF 272


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,579,757
Number of Sequences: 28952
Number of extensions: 372225
Number of successful extensions: 857
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)