Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0844
         (609 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4S556 Cluster: Chromosome 6 SCAF14737, whole genome sh...    35   1.3  
UniRef50_Q8XZA5 Cluster: Putative uncharacterized protein; n=1; ...    35   1.7  
UniRef50_A2EWA8 Cluster: RasGEF domain containing protein; n=1; ...    33   5.3  
UniRef50_A4WZ86 Cluster: Putative uncharacterized protein; n=1; ...    33   7.0  
UniRef50_Q8PGR3 Cluster: Putative uncharacterized protein XAC355...    32   9.3  

>UniRef50_Q4S556 Cluster: Chromosome 6 SCAF14737, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 6
           SCAF14737, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 1089

 Score = 35.1 bits (77), Expect = 1.3
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 330 WNPCDPRSSARSPPDTRTRSCRQGSHLRDFG 238
           WNP   R+SAR PP   +R C +G HL   G
Sbjct: 886 WNPQGRRASARRPPLLHSRHCPRGLHLHHCG 916


>UniRef50_Q8XZA5 Cluster: Putative uncharacterized protein; n=1;
           Ralstonia solanacearum|Rep: Putative uncharacterized
           protein - Ralstonia solanacearum (Pseudomonas
           solanacearum)
          Length = 233

 Score = 34.7 bits (76), Expect = 1.7
 Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +1

Query: 1   RTLSASHPDAARDSRYP---VYLCPVLYP*KGATSVH 102
           RTLSA HPD A         +YLCP LYP   A S+H
Sbjct: 89  RTLSALHPDVAGAECVDWAGIYLCPWLYPVGSALSLH 125


>UniRef50_A2EWA8 Cluster: RasGEF domain containing protein; n=1;
           Trichomonas vaginalis G3|Rep: RasGEF domain containing
           protein - Trichomonas vaginalis G3
          Length = 808

 Score = 33.1 bits (72), Expect = 5.3
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +1

Query: 67  VLYP*KGATSVHSSREPACSGYEQVKNNLIAC*TRDEMAETMAYEPAMDDEVYDY 231
           V+ P KG  S+ S  +P     E  K N I      E+   + +EPA DD +Y Y
Sbjct: 420 VVEPAKGVISLGSMADPRVIITEDAKGNKIVSAGPIEILSRIIFEPANDDPLYPY 474


>UniRef50_A4WZ86 Cluster: Putative uncharacterized protein; n=1;
           Rhodobacter sphaeroides ATCC 17025|Rep: Putative
           uncharacterized protein - Rhodobacter sphaeroides ATCC
           17025
          Length = 335

 Score = 32.7 bits (71), Expect = 7.0
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -1

Query: 294 PPDTRTRSCRQGSHLRDFGGIIIVNFIV--HRWFVSHRLGHFVSRLAR 157
           PPD  T +   GS + D  G     FIV  H W  SH L H +SR  R
Sbjct: 2   PPDAMTATDAAGSKVSDACGAPAAWFIVTSHGWSASHWLAHNLSRHPR 49


>UniRef50_Q8PGR3 Cluster: Putative uncharacterized protein XAC3553;
           n=3; Xanthomonas|Rep: Putative uncharacterized protein
           XAC3553 - Xanthomonas axonopodis pv. citri
          Length = 99

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 191 WLTNQRWTMKFTIMIPP 241
           WLTN RWT  + +++PP
Sbjct: 59  WLTNMRWTASYALLVPP 75


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 490,606,948
Number of Sequences: 1657284
Number of extensions: 8239791
Number of successful extensions: 24822
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24816
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)