Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0844
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0961 + 21263735-21263773,21264157-21264279,21266774-212668...    30   1.2  
06_02_0008 - 10552066-10552116,10552224-10552323,10552394-105524...    30   1.6  
07_03_0983 + 23124866-23125075,23125846-23125932,23126039-231262...    29   2.9  
12_02_1267 - 27448871-27450445                                         28   5.0  
08_02_1397 + 26744154-26744450,26745079-26745138,26745251-267453...    28   5.0  
03_06_0380 + 33518309-33518464,33518978-33519064,33519155-335194...    28   5.0  
02_05_0459 + 29217728-29217919,29218095-29218190,29219785-292198...    28   6.7  

>04_03_0961 +
           21263735-21263773,21264157-21264279,21266774-21266847,
           21266939-21267095,21267554-21267694,21267739-21267823,
           21268810-21268903,21269041-21269239,21269515-21269549,
           21270076-21270631,21270722-21270882,21271704-21271718,
           21273078-21273330,21273439-21273562,21273688-21273788,
           21274870-21274938,21275060-21275191,21275270-21275404,
           21275489-21275551,21275636-21275881,21276007-21276285
          Length = 1026

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +2

Query: 479 TAQLLHRRHRRMTLEAIAQSESSYTSSEEGVRCGKTVTPVL 601
           T   LHRRH+R   E IA  E  Y   +    CG     VL
Sbjct: 72  TNDFLHRRHKRQKEEDIAVCECQYNLLDPDSACGDRCLNVL 112


>06_02_0008 -
           10552066-10552116,10552224-10552323,10552394-10552449,
           10553950-10557180
          Length = 1145

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
 Frame = -3

Query: 265 SGVTSPGFWWYHNRKLHRPS--LVRKPSSRPFRLSFSTQSNYF--SLVRIHYMLVRETSA 98
           +G++ PG +W  N   +RP+  ++R+ + R F +   + +  F  SLV I  +L  E S 
Sbjct: 299 AGMSPPGGFWAENSHGYRPATFVLRRHNLRRFNIFTCSNATSFVASLVTIILLLSTELSR 358

Query: 97  H 95
           H
Sbjct: 359 H 359


>07_03_0983 +
           23124866-23125075,23125846-23125932,23126039-23126290,
           23126399-23126563,23126897-23126950,23127106-23127252,
           23127814-23128191
          Length = 430

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 171 RRNGRDDGLRTSDGR*SLRL*YHQ--NPGDVTPDDMNESGYQEGSEQSYGDR 320
           RR  ++D LR S  R   +  +    NP  V PD +NESG+Q       GD+
Sbjct: 142 RRTKKEDVLRASSIRRYGKKKHKSTPNPMSVDPDMLNESGHQHAIAYVEGDK 193


>12_02_1267 - 27448871-27450445
          Length = 524

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 431 RGRVLRSHPAEEAARATAQLLHRRHRRMTLEA 526
           R  V+  +P ++ AR    + HRRHR + L+A
Sbjct: 127 RTNVISFYPRDDDARFYRLVFHRRHRDLVLDA 158


>08_02_1397 +
           26744154-26744450,26745079-26745138,26745251-26745331,
           26745437-26745637,26745746-26745841,26746479-26746675,
           26746774-26747005
          Length = 387

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 10  SASHPDAARDSRYPVYLCPVLYP*KGATSVH 102
           S  HPDAAR  R    L PVL+  +G T+ H
Sbjct: 227 STFHPDAARIMRELQSLYPVLFLTEGGTAQH 257


>03_06_0380 +
           33518309-33518464,33518978-33519064,33519155-33519400,
           33519559-33519723,33519920-33519973,33520079-33520225,
           33520916-33521293
          Length = 410

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 171 RRNGRDDGLRTSDGR*SLRL*YHQ-NPGDVTPDDMNESGYQEGSEQSYGDR 320
           RR  RDD LR S  R   +  +   NP  V P+ +NE G+Q       GD+
Sbjct: 123 RRTKRDDLLRASSMRRYGKKRHPAPNPMSVDPNLLNEGGHQHAIAYVQGDK 173


>02_05_0459 +
           29217728-29217919,29218095-29218190,29219785-29219895,
           29219984-29220293,29220745-29220835,29220976-29221285,
           29221469-29221617,29221914-29222418
          Length = 587

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 241 WWYHNRKLHRPSLVRKPSSRPFRLS 167
           W Y NR L +PSL+R+ S   F LS
Sbjct: 274 WGYINRILGQPSLIRESSMPKFPLS 298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,716,451
Number of Sequences: 37544
Number of extensions: 241734
Number of successful extensions: 780
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)