Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0844
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.3  
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_9191| Best HMM Match : TolA (HMM E-Value=1)                         30   1.7  
SB_48888| Best HMM Match : rve (HMM E-Value=6.4e-33)                   29   2.9  
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_13623| Best HMM Match : rve (HMM E-Value=0.00044)                   29   2.9  
SB_6333| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  

>SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2342

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 283  PDSFMSSGVTSPGFWWYHNRKLHRPSLVRKPSSRPF 176
            P+   S G+ +  FW    R+  RPS    P++RPF
Sbjct: 1703 PNKVFSQGLRTTDFWMEAKRRFVRPSPGGGPAARPF 1738


>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1414

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +2

Query: 431  RGRVLRSHPAEEAARATAQLLHRRHRRMTLE 523
            +GR +R  PA+ ++R+ + + H++HR  +LE
Sbjct: 928  QGRGVRKRPAKASSRSLSPVEHKKHRSRSLE 958


>SB_9191| Best HMM Match : TolA (HMM E-Value=1)
          Length = 541

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +2

Query: 431 RGRVLRSHPAEEAARATAQLLHRRHRRMTLE 523
           +GR +R  PA+ ++R+ + + H++HR  +LE
Sbjct: 118 QGRGVRKRPAKASSRSLSPVEHKKHRSRSLE 148


>SB_48888| Best HMM Match : rve (HMM E-Value=6.4e-33)
          Length = 566

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -1

Query: 321 CDPRSSARS-PPDTRTRSCR 265
           CD RS+AR  PP TR+ SCR
Sbjct: 535 CDVRSTARQVPPTTRSTSCR 554


>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1696

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -1

Query: 321  CDPRSSARS-PPDTRTRSCR 265
            CD RS+AR  PP TR+ SCR
Sbjct: 1665 CDVRSTARQVPPTTRSTSCR 1684


>SB_13623| Best HMM Match : rve (HMM E-Value=0.00044)
          Length = 203

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -1

Query: 321 CDPRSSARS-PPDTRTRSCR 265
           CD RS+AR  PP TR+ SCR
Sbjct: 172 CDVRSTARQVPPTTRSTSCR 191


>SB_6333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 152 KLFFTCSYPLHAGSRDECTLVAPF*GYNTGHRYTG*RESRA 30
           ++ F C Y   A   D C  VAP  G+N  H   G  +S A
Sbjct: 7   RMLFWCLYSTSASDSDLCDRVAPM-GFNRYHLLIGKEQSAA 46


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,788,945
Number of Sequences: 59808
Number of extensions: 288930
Number of successful extensions: 1078
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)