BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0844 (609 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AY741200-1|AAU89102.1| 596|Caenorhabditis elegans STE20-like se... 29 2.0 AL132898-15|CAC14417.2| 596|Caenorhabditis elegans Hypothetical... 29 2.0 AF047659-6|AAC04424.1| 409|Caenorhabditis elegans Hypothetical ... 27 7.9 >AY741200-1|AAU89102.1| 596|Caenorhabditis elegans STE20-like serine/threonine kinase protein. Length = 596 Score = 29.5 bits (63), Expect = 2.0 Identities = 21/51 (41%), Positives = 24/51 (47%) Frame = -1 Query: 252 LRDFGGIIIVNFIVHRWFVSHRLGHFVSRLARNQIIFHLFVSTTCWFARRV 100 L D G I I +F V W S G +SR Q + H FV T CW A V Sbjct: 248 LADDGTIQIADFGVSGWLASS--GGDLSR----QKVRHTFVGTPCWMAPEV 292 >AL132898-15|CAC14417.2| 596|Caenorhabditis elegans Hypothetical protein Y59A8B.23 protein. Length = 596 Score = 29.5 bits (63), Expect = 2.0 Identities = 21/51 (41%), Positives = 24/51 (47%) Frame = -1 Query: 252 LRDFGGIIIVNFIVHRWFVSHRLGHFVSRLARNQIIFHLFVSTTCWFARRV 100 L D G I I +F V W S G +SR Q + H FV T CW A V Sbjct: 248 LADDGTIQIADFGVSGWLASS--GGDLSR----QKVRHTFVGTPCWMAPEV 292 >AF047659-6|AAC04424.1| 409|Caenorhabditis elegans Hypothetical protein K07H8.5 protein. Length = 409 Score = 27.5 bits (58), Expect = 7.9 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Frame = +1 Query: 496 PSTSKDDARG-YCSERIELYIVRRRGAVRENRHARAQL 606 P DD R C E+ ELYI+ R G V + RA + Sbjct: 25 PEHFLDDKRAPICKEKFELYIMPRNGLVIWPKSGRASM 62 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,140,879 Number of Sequences: 27780 Number of extensions: 195227 Number of successful extensions: 571 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 553 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 571 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1311096392 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -