Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0844
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY741200-1|AAU89102.1|  596|Caenorhabditis elegans STE20-like se...    29   2.0  
AL132898-15|CAC14417.2|  596|Caenorhabditis elegans Hypothetical...    29   2.0  
AF047659-6|AAC04424.1|  409|Caenorhabditis elegans Hypothetical ...    27   7.9  

>AY741200-1|AAU89102.1|  596|Caenorhabditis elegans STE20-like
           serine/threonine kinase protein.
          Length = 596

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 21/51 (41%), Positives = 24/51 (47%)
 Frame = -1

Query: 252 LRDFGGIIIVNFIVHRWFVSHRLGHFVSRLARNQIIFHLFVSTTCWFARRV 100
           L D G I I +F V  W  S   G  +SR    Q + H FV T CW A  V
Sbjct: 248 LADDGTIQIADFGVSGWLASS--GGDLSR----QKVRHTFVGTPCWMAPEV 292


>AL132898-15|CAC14417.2|  596|Caenorhabditis elegans Hypothetical
           protein Y59A8B.23 protein.
          Length = 596

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 21/51 (41%), Positives = 24/51 (47%)
 Frame = -1

Query: 252 LRDFGGIIIVNFIVHRWFVSHRLGHFVSRLARNQIIFHLFVSTTCWFARRV 100
           L D G I I +F V  W  S   G  +SR    Q + H FV T CW A  V
Sbjct: 248 LADDGTIQIADFGVSGWLASS--GGDLSR----QKVRHTFVGTPCWMAPEV 292


>AF047659-6|AAC04424.1|  409|Caenorhabditis elegans Hypothetical
           protein K07H8.5 protein.
          Length = 409

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 496 PSTSKDDARG-YCSERIELYIVRRRGAVRENRHARAQL 606
           P    DD R   C E+ ELYI+ R G V   +  RA +
Sbjct: 25  PEHFLDDKRAPICKEKFELYIMPRNGLVIWPKSGRASM 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,140,879
Number of Sequences: 27780
Number of extensions: 195227
Number of successful extensions: 571
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)