Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0844
         (609 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28460.1 68415.m03457 DC1 domain-containing protein contains ...    28   5.6  
At3g60470.1 68416.m06763 hypothetical protein contains Pfam prof...    27   7.4  
At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containi...    27   9.7  

>At2g28460.1 68415.m03457 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 704

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 461 EEAARATAQLLHRRHRRMTLEAIAQSESSYT 553
           +E  +A  ++ H  HR+ +L+ +   ESSYT
Sbjct: 196 KEYEKAPVEIKHSLHRKHSLQLVLLDESSYT 226


>At3g60470.1 68416.m06763 hypothetical protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 540

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 283 PDSFMSSGVTSPGFWWYHNRKLHR 212
           PD+ +    ++PG WW+     HR
Sbjct: 9   PDTVLELNESTPGMWWFPTNPEHR 32


>At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 501

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = +1

Query: 478 HSSASTPSTSKDDARGYCS-----ERIELYIVRRRGAVRENR 588
           HSS STPST    +RGY S     E I +Y   +R  ++ N+
Sbjct: 72  HSSDSTPSTWNMLSRGYSSSDSPVESIWVYSEMKRRGIKPNK 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,480,843
Number of Sequences: 28952
Number of extensions: 178361
Number of successful extensions: 489
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)