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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0843
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   143   1e-35
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    78   8e-16
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    77   2e-15
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    69   5e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    45   7e-06
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    43   3e-05
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    38   8e-04
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    29   0.37 
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    27   1.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.0  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   2.6  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   3.4  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.4  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    26   3.4  
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos...    25   4.5  
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    25   7.9  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   7.9  
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    22   10.0 

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  143 bits (346), Expect = 1e-35
 Identities = 62/71 (87%), Positives = 65/71 (91%)
 Frame = +1

Query: 247 GTEDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 426
           G +DSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTE
Sbjct: 48  GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTE 107

Query: 427 APLNPKATERR 459
           APLNPK+   +
Sbjct: 108 APLNPKSNREK 118



 Score =  101 bits (241), Expect = 8e-23
 Identities = 43/49 (87%), Positives = 48/49 (97%)
 Frame = +2

Query: 110 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQR 256
           +EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQ+
Sbjct: 2   EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQK 50



 Score = 28.3 bits (60), Expect = 0.64
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = +3

Query: 438 PQGHREKMTQIMFET 482
           P+ +REKMTQI+FET
Sbjct: 112 PKSNREKMTQIIFET 126


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 77.8 bits (183), Expect = 8e-16
 Identities = 33/62 (53%), Positives = 46/62 (74%), Gaps = 1/62 (1%)
 Frame = +1

Query: 253 EDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEA 429
           +D +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L   PEEHP+LLTE 
Sbjct: 54  KDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEP 113

Query: 430 PL 435
           PL
Sbjct: 114 PL 115



 Score = 55.6 bits (128), Expect = 4e-09
 Identities = 23/45 (51%), Positives = 32/45 (71%)
 Frame = +2

Query: 128 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTL 262
           + +DNGSG  KAGFAGDD P+ +FP+ VGR +H+ VM    Q+ +
Sbjct: 12  ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDM 56


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 76.6 bits (180), Expect = 2e-15
 Identities = 29/76 (38%), Positives = 52/76 (68%)
 Frame = +1

Query: 232 RDGRYGTEDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 411
           + G    +D  VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P    
Sbjct: 43  KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102

Query: 412 VLLTEAPLNPKATERR 459
           +LLTE P+NP A   +
Sbjct: 103 ILLTEPPMNPVANREK 118



 Score = 48.0 bits (109), Expect = 7e-07
 Identities = 21/35 (60%), Positives = 26/35 (74%)
 Frame = +2

Query: 116 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 220
           E A +V+DNG+G  K G+A D+ PR  FPSIVGRP
Sbjct: 2   ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 68.5 bits (160), Expect = 5e-13
 Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
 Frame = +1

Query: 256 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 432
           D ++G++A  K     +L YPI HG + NWD ME+ W  + +  LR  PE+H  LLTE P
Sbjct: 73  DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132

Query: 433 LNP 441
           LNP
Sbjct: 133 LNP 135



 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 14/28 (50%), Positives = 23/28 (82%)
 Frame = +2

Query: 128 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 211
           +++DNG+G  K G+AG+DAP  VFP+++
Sbjct: 8   IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 44.8 bits (101), Expect = 7e-06
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
 Frame = +1

Query: 232 RDGRYGTEDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 408
           RD +     + VG++   + G  ++ + P E  +++NWD ME++  +TF  +L +   EH
Sbjct: 58  RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116

Query: 409 PVLLTEAPLNP 441
           P+ +TE   NP
Sbjct: 117 PICMTEPLANP 127



 Score = 35.9 bits (79), Expect = 0.003
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +2

Query: 128 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 223
           LV+DNGS   +AG+ G+  P+ VF ++V R R
Sbjct: 27  LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 42.7 bits (96), Expect = 3e-05
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +1

Query: 298 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 441
           + +K  I +G V NWD    +W +    +L+  P EHP+L+TE   NP
Sbjct: 63  MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNP 110



 Score = 40.3 bits (90), Expect = 1e-04
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +2

Query: 113 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 214
           +EV+A+V+D GS   + GF+G+D P+ V PS  G
Sbjct: 9   DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 37.9 bits (84), Expect = 8e-04
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +1

Query: 256 DSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEA 429
           + YV DE Q    I  + +K    +GI+ +W+     W      +L+V P E+ +++TE 
Sbjct: 50  NKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEP 109

Query: 430 PLNPKATERR 459
             NP++  ++
Sbjct: 110 SWNPQSVRQQ 119



 Score = 36.7 bits (81), Expect = 0.002
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +2

Query: 113 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 214
           EE+ +LV+D GS   + G+AG+++P  + PS  G
Sbjct: 8   EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = -2

Query: 345 IPVSDDSVFDGVFEGQDTSFALCLISYIRVLCPIPTITP*WRGLPTIEGNTARGASSPAK 166
           +P  + +V        +TSFAL   S    L   PT +      P +E +    +S+PA 
Sbjct: 63  LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122

Query: 165 PALHIP 148
           P L+ P
Sbjct: 123 PQLNSP 128


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 283 SVPHLLHKSPLSHTDHHALMAGPSHDRGEH 194
           +VP L    P  HT H +   G +H++G H
Sbjct: 148 TVPLLSEMDPAEHTRHDSKTLGLNHNQGAH 177


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = -2

Query: 243 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 109
           PT+ P     P    N     S P         PL+TTN  TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 249 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 157
           P+PT  P    LPT   NT +    P+ PAL
Sbjct: 74  PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 155 TYRSHCLLPTRQLLRRTS*ISEI 87
           TYR H  +PT  LL  T  +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 392 SPPRNTQSCSLRLPSTPRPQREDDPDHVRN 481
           SPP++T+  S R PS P    ++    V+N
Sbjct: 285 SPPQSTRPSSTRFPSVPLSDEKNSIVSVKN 314


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 313 PIEHGIVTNWDDMEKIWHHTF 375
           PI+ G V +W+ ++  W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133


>SPCC16C4.17 |mug123||meiotically upregulated gene
           Mug123|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -3

Query: 275 SSPT*ESSVPYRPSRPDGGAFPRSRGTRREEHHLLRNRPCTYRSHCLLPTRQLL 114
           SSP+ +SS     S   G    RSR    + H +   RP +  S  + P   +L
Sbjct: 61  SSPSIKSSSQNGKSSSKGLGGMRSRVFSSQHHGVYHTRPASLHSRTMAPQHTIL 114


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 128 LVVDNGSGMCKAGFAG 175
           +V+DNG+   KAGFAG
Sbjct: 8   IVLDNGAYHIKAGFAG 23


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 173 GDDAPRAVFPSIVGRPRHQGVMVGM 247
           G+  PRA F  ++  P H G+++ M
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM 526


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 21.8 bits (44), Expect(2) = 10.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 295 ILTLKYPIEHGIVTN 339
           I+T  YP  HGIV+N
Sbjct: 125 IVTGLYPESHGIVSN 139



 Score = 20.6 bits (41), Expect(2) = 10.0
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 334 TNWDDMEKIWHHTFYNELRVAPEEHP 411
           T WD  E IW +   N +R A    P
Sbjct: 162 TWWDKGEPIWVNAERNNVRSAVHMWP 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,190,007
Number of Sequences: 5004
Number of extensions: 48255
Number of successful extensions: 133
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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