BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0843 (484 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 143 1e-35 SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 78 8e-16 SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 77 2e-15 SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 69 5e-13 SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 45 7e-06 SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 43 3e-05 SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 38 8e-04 SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 29 0.37 SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos... 27 1.1 SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.0 SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 2.6 SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 3.4 SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.4 SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 3.4 SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos... 25 4.5 SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 7.9 SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 7.9 SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 22 10.0 >SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2|||Manual Length = 375 Score = 143 bits (346), Expect = 1e-35 Identities = 62/71 (87%), Positives = 65/71 (91%) Frame = +1 Query: 247 GTEDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 426 G +DSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTE Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTE 107 Query: 427 APLNPKATERR 459 APLNPK+ + Sbjct: 108 APLNPKSNREK 118 Score = 101 bits (241), Expect = 8e-23 Identities = 43/49 (87%), Positives = 48/49 (97%) Frame = +2 Query: 110 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQR 256 +EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQ+ Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQK 50 Score = 28.3 bits (60), Expect = 0.64 Identities = 11/15 (73%), Positives = 14/15 (93%) Frame = +3 Query: 438 PQGHREKMTQIMFET 482 P+ +REKMTQI+FET Sbjct: 112 PKSNREKMTQIIFET 126 >SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 77.8 bits (183), Expect = 8e-16 Identities = 33/62 (53%), Positives = 46/62 (74%), Gaps = 1/62 (1%) Frame = +1 Query: 253 EDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEA 429 +D +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE Sbjct: 54 KDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEP 113 Query: 430 PL 435 PL Sbjct: 114 PL 115 Score = 55.6 bits (128), Expect = 4e-09 Identities = 23/45 (51%), Positives = 32/45 (71%) Frame = +2 Query: 128 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTL 262 + +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM Q+ + Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDM 56 >SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 390 Score = 76.6 bits (180), Expect = 2e-15 Identities = 29/76 (38%), Positives = 52/76 (68%) Frame = +1 Query: 232 RDGRYGTEDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 411 + G +D VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102 Query: 412 VLLTEAPLNPKATERR 459 +LLTE P+NP A + Sbjct: 103 ILLTEPPMNPVANREK 118 Score = 48.0 bits (109), Expect = 7e-07 Identities = 21/35 (60%), Positives = 26/35 (74%) Frame = +2 Query: 116 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 220 E A +V+DNG+G K G+A D+ PR FPSIVGRP Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36 >SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces pombe|chr 1|||Manual Length = 427 Score = 68.5 bits (160), Expect = 5e-13 Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%) Frame = +1 Query: 256 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 432 D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132 Query: 433 LNP 441 LNP Sbjct: 133 LNP 135 Score = 40.7 bits (91), Expect = 1e-04 Identities = 14/28 (50%), Positives = 23/28 (82%) Frame = +2 Query: 128 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 211 +++DNG+G K G+AG+DAP VFP+++ Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35 >SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 721 Score = 44.8 bits (101), Expect = 7e-06 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Frame = +1 Query: 232 RDGRYGTEDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 408 RD + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EH Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116 Query: 409 PVLLTEAPLNP 441 P+ +TE NP Sbjct: 117 PICMTEPLANP 127 Score = 35.9 bits (79), Expect = 0.003 Identities = 15/32 (46%), Positives = 22/32 (68%) Frame = +2 Query: 128 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 223 LV+DNGS +AG+ G+ P+ VF ++V R R Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58 >SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces pombe|chr 2|||Manual Length = 433 Score = 42.7 bits (96), Expect = 3e-05 Identities = 18/48 (37%), Positives = 27/48 (56%) Frame = +1 Query: 298 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 441 + +K I +G V NWD +W + +L+ P EHP+L+TE NP Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNP 110 Score = 40.3 bits (90), Expect = 1e-04 Identities = 16/34 (47%), Positives = 24/34 (70%) Frame = +2 Query: 113 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 214 +EV+A+V+D GS + GF+G+D P+ V PS G Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42 >SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 430 Score = 37.9 bits (84), Expect = 8e-04 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Frame = +1 Query: 256 DSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEA 429 + YV DE Q I + +K +GI+ +W+ W +L+V P E+ +++TE Sbjct: 50 NKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEP 109 Query: 430 PLNPKATERR 459 NP++ ++ Sbjct: 110 SWNPQSVRQQ 119 Score = 36.7 bits (81), Expect = 0.002 Identities = 14/34 (41%), Positives = 23/34 (67%) Frame = +2 Query: 113 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 214 EE+ +LV+D GS + G+AG+++P + PS G Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41 >SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 277 Score = 29.1 bits (62), Expect = 0.37 Identities = 19/66 (28%), Positives = 29/66 (43%) Frame = -2 Query: 345 IPVSDDSVFDGVFEGQDTSFALCLISYIRVLCPIPTITP*WRGLPTIEGNTARGASSPAK 166 +P + +V +TSFAL S L PT + P +E + +S+PA Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122 Query: 165 PALHIP 148 P L+ P Sbjct: 123 PQLNSP 128 >SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 282 Score = 27.5 bits (58), Expect = 1.1 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = -1 Query: 283 SVPHLLHKSPLSHTDHHALMAGPSHDRGEH 194 +VP L P HT H + G +H++G H Sbjct: 148 TVPLLSEMDPAEHTRHDSKTLGLNHNQGAH 177 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 26.6 bits (56), Expect = 2.0 Identities = 15/45 (33%), Positives = 18/45 (40%) Frame = -2 Query: 243 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 109 PT+ P P N S P PL+TTN TS+S Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455 >SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual Length = 309 Score = 26.2 bits (55), Expect = 2.6 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -2 Query: 249 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 157 P+PT P LPT NT + P+ PAL Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101 >SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual Length = 1828 Score = 25.8 bits (54), Expect = 3.4 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = -3 Query: 155 TYRSHCLLPTRQLLRRTS*ISEI 87 TYR H +PT LL T +SEI Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190 >SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 551 Score = 25.8 bits (54), Expect = 3.4 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = +2 Query: 392 SPPRNTQSCSLRLPSTPRPQREDDPDHVRN 481 SPP++T+ S R PS P ++ V+N Sbjct: 285 SPPQSTRPSSTRFPSVPLSDEKNSIVSVKN 314 >SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosaccharomyces pombe|chr 1|||Manual Length = 523 Score = 25.8 bits (54), Expect = 3.4 Identities = 7/21 (33%), Positives = 13/21 (61%) Frame = +1 Query: 313 PIEHGIVTNWDDMEKIWHHTF 375 PI+ G V +W+ ++ W H + Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133 >SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizosaccharomyces pombe|chr 3|||Manual Length = 235 Score = 25.4 bits (53), Expect = 4.5 Identities = 16/54 (29%), Positives = 23/54 (42%) Frame = -3 Query: 275 SSPT*ESSVPYRPSRPDGGAFPRSRGTRREEHHLLRNRPCTYRSHCLLPTRQLL 114 SSP+ +SS S G RSR + H + RP + S + P +L Sbjct: 61 SSPSIKSSSQNGKSSSKGLGGMRSRVFSSQHHGVYHTRPASLHSRTMAPQHTIL 114 >SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces pombe|chr 3|||Manual Length = 401 Score = 24.6 bits (51), Expect = 7.9 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = +2 Query: 128 LVVDNGSGMCKAGFAG 175 +V+DNG+ KAGFAG Sbjct: 8 IVLDNGAYHIKAGFAG 23 >SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr 1|||Manual Length = 1517 Score = 24.6 bits (51), Expect = 7.9 Identities = 9/25 (36%), Positives = 15/25 (60%) Frame = +2 Query: 173 GDDAPRAVFPSIVGRPRHQGVMVGM 247 G+ PRA F ++ P H G+++ M Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM 526 >SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces pombe|chr 2|||Manual Length = 485 Score = 21.8 bits (44), Expect(2) = 10.0 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +1 Query: 295 ILTLKYPIEHGIVTN 339 I+T YP HGIV+N Sbjct: 125 IVTGLYPESHGIVSN 139 Score = 20.6 bits (41), Expect(2) = 10.0 Identities = 10/26 (38%), Positives = 12/26 (46%) Frame = +1 Query: 334 TNWDDMEKIWHHTFYNELRVAPEEHP 411 T WD E IW + N +R A P Sbjct: 162 TWWDKGEPIWVNAERNNVRSAVHMWP 187 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,190,007 Number of Sequences: 5004 Number of extensions: 48255 Number of successful extensions: 133 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 112 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 131 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 186042952 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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