Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0843
(484 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 148 2e-36
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 148 2e-36
SB_56| Best HMM Match : Actin (HMM E-Value=0) 148 2e-36
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 148 2e-36
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 148 2e-36
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 103 1e-22
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 3e-13
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 1e-09
SB_54| Best HMM Match : Actin (HMM E-Value=0) 60 1e-09
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 57 7e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 51 4e-07
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 36 0.023
SB_43644| Best HMM Match : SH3_1 (HMM E-Value=0) 35 0.040
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 34 0.053
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.12
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 32 0.22
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.38
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.38
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.87
SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0) 29 2.0
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 29 2.7
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.5
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 28 3.5
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.5
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 28 3.5
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.5
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.5
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 28 3.5
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 28 3.5
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.5
SB_9012| Best HMM Match : MobA_MobL (HMM E-Value=0.014) 28 4.6
SB_41785| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_15831| Best HMM Match : Collagen (HMM E-Value=0.11) 27 6.1
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 27 8.1
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 148 bits (359), Expect = 2e-36
Identities = 65/71 (91%), Positives = 67/71 (94%)
Frame = +1
Query: 247 GTEDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 426
G +DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 427 APLNPKATERR 459
APLNPKA +
Sbjct: 109 APLNPKANREK 119
Score = 104 bits (250), Expect = 3e-23
Identities = 47/51 (92%), Positives = 50/51 (98%)
Frame = +2
Query: 104 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQR 256
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ+
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 51
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +3
Query: 438 PQGHREKMTQIMFET 482
P+ +REKMTQIMFET
Sbjct: 113 PKANREKMTQIMFET 127
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 148 bits (359), Expect = 2e-36
Identities = 65/71 (91%), Positives = 67/71 (94%)
Frame = +1
Query: 247 GTEDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 426
G +DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 107
Query: 427 APLNPKATERR 459
APLNPKA +
Sbjct: 108 APLNPKANREK 118
Score = 101 bits (243), Expect = 2e-22
Identities = 45/49 (91%), Positives = 49/49 (100%)
Frame = +2
Query: 110 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQR 256
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ+
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 50
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +3
Query: 438 PQGHREKMTQIMFET 482
P+ +REKMTQIMFET
Sbjct: 112 PKANREKMTQIMFET 126
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 148 bits (359), Expect = 2e-36
Identities = 65/71 (91%), Positives = 67/71 (94%)
Frame = +1
Query: 247 GTEDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 426
G +DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 107
Query: 427 APLNPKATERR 459
APLNPKA +
Sbjct: 108 APLNPKANREK 118
Score = 103 bits (246), Expect = 1e-22
Identities = 46/49 (93%), Positives = 49/49 (100%)
Frame = +2
Query: 110 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQR 256
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ+
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 50
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +3
Query: 438 PQGHREKMTQIMFET 482
P+ +REKMTQIMFET
Sbjct: 112 PKANREKMTQIMFET 126
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 148 bits (359), Expect = 2e-36
Identities = 65/71 (91%), Positives = 67/71 (94%)
Frame = +1
Query: 247 GTEDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 426
G +DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 427 APLNPKATERR 459
APLNPKA +
Sbjct: 109 APLNPKANREK 119
Score = 109 bits (261), Expect = 2e-24
Identities = 48/51 (94%), Positives = 51/51 (100%)
Frame = +2
Query: 104 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQR 256
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ+
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 51
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +3
Query: 438 PQGHREKMTQIMFET 482
P+ +REKMTQIMFET
Sbjct: 113 PKANREKMTQIMFET 127
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 148 bits (359), Expect = 2e-36
Identities = 65/71 (91%), Positives = 67/71 (94%)
Frame = +1
Query: 247 GTEDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 426
G +DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 427 APLNPKATERR 459
APLNPKA +
Sbjct: 109 APLNPKANREK 119
Score = 104 bits (250), Expect = 3e-23
Identities = 45/51 (88%), Positives = 50/51 (98%)
Frame = +2
Query: 104 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQR 256
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ+
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 51
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +3
Query: 438 PQGHREKMTQIMFET 482
P+ +REKMTQIMFET
Sbjct: 113 PKANREKMTQIMFET 127
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 103 bits (246), Expect = 1e-22
Identities = 45/49 (91%), Positives = 49/49 (100%)
Frame = +2
Query: 110 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQR 256
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ+
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 50
Score = 85.4 bits (202), Expect = 2e-17
Identities = 38/43 (88%), Positives = 39/43 (90%)
Frame = +1
Query: 247 GTEDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 375
G +DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 71.7 bits (168), Expect = 3e-13
Identities = 33/73 (45%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Frame = +1
Query: 226 SGRDGRYGTEDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPE 402
S + G +D VGDEA R +L + YP+++GIV NWDDM+ +W +TF +++ + P
Sbjct: 44 SQKVGDIEVKDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPR 103
Query: 403 EHPVLLTEAPLNP 441
VLLTE PLNP
Sbjct: 104 NTKVLLTEPPLNP 116
Score = 44.4 bits (100), Expect = 5e-05
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +2
Query: 122 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 220
+ +V DNG+G K G+AG + P +FPS+VGRP
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRP 39
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +2
Query: 113 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 229
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 59.7 bits (138), Expect = 1e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +2
Query: 128 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 229
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 46.4 bits (105), Expect = 1e-05
Identities = 21/35 (60%), Positives = 25/35 (71%)
Frame = +1
Query: 355 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKATERR 459
K+W H F ++LRV E+ PVLLTEAPLNPK R
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRER 2163
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 57.2 bits (132), Expect = 7e-09
Identities = 28/68 (41%), Positives = 36/68 (52%)
Frame = +1
Query: 256 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 435
D ++GDEA K T K+PI H IV +WD ME+ W + LR PE+H LL L
Sbjct: 283 DFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLLAVLAL 341
Query: 436 NPKATERR 459
T R+
Sbjct: 342 AASWTSRQ 349
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 51.2 bits (117), Expect = 4e-07
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +2
Query: 98 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 244
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -1
Query: 226 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 110
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 35.5 bits (78), Expect = 0.023
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 313 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 444
PI+ G++ +WD EKI + + ++ HP+L++EA N +
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTR 46
>SB_43644| Best HMM Match : SH3_1 (HMM E-Value=0)
Length = 704
Score = 34.7 bits (76), Expect = 0.040
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 371 PSTMSCVSPPRNTQSCSLRLPSTPRPQREDDPDHVRN 481
P+ + PP+N + L S P+P+R PDH RN
Sbjct: 269 PARFQVIDPPKNAKPVFGELHSKPKPERPKIPDHNRN 305
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 34.3 bits (75), Expect = 0.053
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 262 YVGDEAQSKRGILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 384
++GD+ + + L Y P + G + NWD ++IW +TF E
Sbjct: 273 FIGDQIEECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 116 EVAALVVDNGSGMCKAGFAGDDAPRAV 196
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 33.1 bits (72), Expect = 0.12
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Frame = +1
Query: 238 GRYGTEDS---YVGDEAQSKRGIL-TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-- 399
GR G DS VG++ S I L+ P + +VT+++ E++ H F + P
Sbjct: 105 GRKGEPDSGGLAVGNDIGSVEMIRWALRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGG 164
Query: 400 EEHPVLLTEAPLNP 441
HPV++TE NP
Sbjct: 165 VNHPVIMTEPVCNP 178
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 32.3 bits (70), Expect = 0.22
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 403 EHPVLLTEAPLNPKATERR 459
+HPVLLTEAPLNP+ +
Sbjct: 126 QHPVLLTEAPLNPRRNREK 144
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.38
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 201 GNTARGASSPAKPALHIPEPLSTT 130
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.38
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 201 GNTARGASSPAKPALHIPEPLSTT 130
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 0.87
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 201 GNTARGASSPAKPALHIPEPLSTT 130
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 885
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -1
Query: 274 HLLHKSPLSHTDHHALMAGPSHDRGEHGARSIISCETGL 158
H++ K+ +SH +HH ++ + +HG R + SCE+ L
Sbjct: 470 HIITKNIVSHLEHHDILY-----KFQHGFRKLRSCESQL 503
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -1
Query: 292 LFCSVPHLLHKSPLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 149
L C ++ LSH + H M D +HG RS SCET L T
Sbjct: 213 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVPT 259
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 28.3 bits (60), Expect = 3.5
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -1
Query: 292 LFCSVPHLLHKSPLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 149
L C ++ LSH + H M D +HG RS SCET L T
Sbjct: 408 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 454
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 28.3 bits (60), Expect = 3.5
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -1
Query: 292 LFCSVPHLLHKSPLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 149
L C ++ LSH + H M D +HG RS SCET L T
Sbjct: 271 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 317
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 201 GNTARGASSPAKPALHIPEPLSTT 130
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 28.3 bits (60), Expect = 3.5
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -1
Query: 292 LFCSVPHLLHKSPLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 149
L C ++ LSH + H M D +HG RS SCET L T
Sbjct: 249 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 295
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 201 GNTARGASSPAKPALHIPEPLSTT 130
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 28.3 bits (60), Expect = 3.5
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -1
Query: 292 LFCSVPHLLHKSPLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 149
L C ++ LSH + H M D +HG RS SCET L T
Sbjct: 91 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 28.3 bits (60), Expect = 3.5
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -1
Query: 292 LFCSVPHLLHKSPLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 149
L C ++ LSH + H M D +HG RS SCET L T
Sbjct: 91 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 28.3 bits (60), Expect = 3.5
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -1
Query: 292 LFCSVPHLLHKSPLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 149
L C ++ LSH + H M D +HG RS SCET L T
Sbjct: 173 LTCICCKVMEHIVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 219
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 28.3 bits (60), Expect = 3.5
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -1
Query: 292 LFCSVPHLLHKSPLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 149
L C ++ LSH + H M D +HG RS SCET L T
Sbjct: 125 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 171
>SB_9012| Best HMM Match : MobA_MobL (HMM E-Value=0.014)
Length = 125
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 346 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKATER 456
D E +W+ + E R+ +E LL P NP+ T++
Sbjct: 3 DFEILWNKAQFAEKRINSQEAKELLLALPDNPEITDK 39
>SB_41785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 27.5 bits (58), Expect = 6.1
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 395 PPRNTQSCSLRLPSTPRPQREDDPD 469
P R TQ C L P P QR DP+
Sbjct: 6 PHRQTQKCGLDDPIDPSAQRSIDPE 30
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 6.1
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 216 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 106
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_15831| Best HMM Match : Collagen (HMM E-Value=0.11)
Length = 153
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 223 PSGRDGRYGTEDSYVGDEAQSKRG 294
P GRDG G +D+ GD+A + G
Sbjct: 39 PDGRDGTDGGDDADEGDDADGRDG 62
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 122 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 226
+ +++D GS KAGFA ++A + + S++G H
Sbjct: 483 SVIIIDLGSSSVKAGFAQEEA-QVFYISLIGILEH 516
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,783,627
Number of Sequences: 59808
Number of extensions: 442405
Number of successful extensions: 1301
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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