Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0842
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    27   2.7  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   4.8  
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    26   4.8  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    26   4.8  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    26   4.8  
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    25   6.3  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   6.3  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   8.4  

>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +2

Query: 353 RTGRSDTGASARAERSHTRRYSPRRSWDRY 442
           R    D  +S R E S  R YSP R  DRY
Sbjct: 37  RRNYRDERSSRRYEDSQRRDYSPARRRDRY 66


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -1

Query: 159 LLHHF-VFKYYSILLCAQ*RFSWFTSHFAVSPLFSILSNLIKKKSITLRK 13
           +LH F +F+ +SI+L +   + ++     +  + SIL +LI+ +  TLR+
Sbjct: 330 VLHPFYIFQVFSIILWSMDSYYYYAICILIISVVSILGSLIETRK-TLRR 378


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 168 FVSLLHHFVFKYYSILLCAQ*RFSWFTSHFAVSPLFS 58
           F+S+  + +FK  +I++ A     WF  H     LFS
Sbjct: 100 FLSVPVYTIFKNLTIIIIAYGEVLWFGGHVTALTLFS 136


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 155 KSETKMASGDSDHIEVMESSVLKKSENATEQSVARTM 265
           +S    + GD +  EV ESS L+   + +E S  R++
Sbjct: 76  RSNESFSEGDDEPFEVSESSALEDELSDSEDSFIRSV 112


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 233 NATEQSVARTMIATGVRSPKKMYLTTQPSAQWARSAKFTSRTGRSDTG 376
           N+TE+    T   T    P +   T Q     A +AK+ SR  RS+ G
Sbjct: 250 NSTEKDEKYTFELTFPNKPAETISTLQAEEIVALTAKYLSRQMRSEVG 297


>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 429 DLRGLYLLVCDLSALADAPVSDLPVRLVNFADRAHWA 319
           +L+ L  L  D+S ++  P S L   +  FA+R H A
Sbjct: 70  NLQFLLYLNLDMSEMSTVPASTLVTYVQTFANRGHQA 106


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 568 WAGVWFDPSWGKFVVSTVM 512
           W  VW + +WG F VS V+
Sbjct: 103 WIFVWLEVAWGGFWVSRVI 121


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 533 IRRLDGHEACISRSRSGFDARPPIACW 453
           +R + G E        GF  RP IACW
Sbjct: 306 VRGVSGGERKRVTISEGFATRPTIACW 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,067
Number of Sequences: 5004
Number of extensions: 49736
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)