Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0842
(597 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0273 - 1989058-1989349,1989730-1989837,1990315-1990508,199... 33 0.23
11_01_0272 - 2042490-2042781,2043146-2043203,2043385-2043401,204... 33 0.23
07_03_1557 - 27699675-27699972,27700546-27700630,27700741-277008... 32 0.40
03_02_0442 + 8529235-8529620,8529721-8529888,8529993-8530158,853... 32 0.40
06_03_0539 + 21919115-21919313,21919474-21919582,21920595-219208... 31 0.70
02_05_1265 - 35326506-35326773,35326944-35327109,35327194-353273... 31 0.70
12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768... 31 0.92
03_05_0845 - 28155065-28155374,28156201-28156342,28156375-281565... 30 1.2
03_02_0459 + 8649448-8651994 25 2.5
04_04_0895 - 29168107-29168229,29168617-29170068 29 2.8
01_06_1428 - 37301697-37302175,37302300-37302471,37302570-373034... 29 2.8
01_01_0267 + 2201404-2202501 29 2.8
11_06_0645 - 25814302-25814759,25814853-25815005,25815032-258152... 29 3.7
02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178 29 3.7
01_06_0922 - 33022709-33023545 29 3.7
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 28 4.9
11_01_0066 - 536281-537196,537397-537452 27 8.6
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857... 27 8.6
>12_01_0273 -
1989058-1989349,1989730-1989837,1990315-1990508,
1990601-1990717,1990801-1990966,1991323-1991490,
1991734-1993052
Length = 787
Score = 32.7 bits (71), Expect = 0.23
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 528 TNFPHEGSNHTPAHHYSEFKFK 593
T FP EGS HTP H +F++K
Sbjct: 467 TRFPPEGSKHTPPHQSCDFRWK 488
Score = 31.1 bits (67), Expect = 0.70
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +1
Query: 391 GEITYKKIQSSQIMGSIQLGIQHAIGGLASKPERDLLMQAS*PSRR---RISPTKDRTTR 561
GE K ++ ++M ++QLGI+HA+G ++ DL A P + R P + T
Sbjct: 419 GETISKGHKNYELMLNLQLGIRHAVGRQSAPASLDLKSSAFDPKEKVWTRFPPEGSKHTP 478
Query: 562 P 564
P
Sbjct: 479 P 479
>11_01_0272 -
2042490-2042781,2043146-2043203,2043385-2043401,
2043572-2043765,2043858-2043974,2044059-2044224,
2044430-2044597,2044741-2046047
Length = 772
Score = 32.7 bits (71), Expect = 0.23
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 528 TNFPHEGSNHTPAHHYSEFKFK 593
T FP EGS HTP H +F++K
Sbjct: 463 TRFPPEGSKHTPPHQSCDFRWK 484
Score = 31.1 bits (67), Expect = 0.70
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +1
Query: 391 GEITYKKIQSSQIMGSIQLGIQHAIGGLASKPERDLLMQAS*PSRR---RISPTKDRTTR 561
GE K ++ ++M ++QLGI+HA+G ++ DL A P + R P + T
Sbjct: 415 GETISKGHKNYELMLNLQLGIRHAVGRQSAPASLDLKSSAFDPKEKVWTRFPPEGSKHTP 474
Query: 562 P 564
P
Sbjct: 475 P 475
>07_03_1557 -
27699675-27699972,27700546-27700630,27700741-27700847,
27700942-27701135,27701252-27701368,27701466-27701631,
27701723-27701887,27702185-27703428
Length = 791
Score = 31.9 bits (69), Expect = 0.40
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 528 TNFPHEGSNHTPAHHYSEFKFK 593
T FP EGS +TP H+ +FK+K
Sbjct: 441 TKFPPEGSKYTPPHNSCDFKWK 462
>03_02_0442 +
8529235-8529620,8529721-8529888,8529993-8530158,
8530579-8530689,8530845-8530993,8531087-8531217,
8531322-8531421,8532060-8532366
Length = 505
Score = 31.9 bits (69), Expect = 0.40
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 528 TNFPHEGSNHTPAHHYSEFKFK 593
T FP EGS TP HH +F++K
Sbjct: 156 TRFPPEGSKFTPPHHSVDFRWK 177
>06_03_0539 +
21919115-21919313,21919474-21919582,21920595-21920819,
21921140-21921239,21921782-21921865,21922000-21922058,
21922578-21922770
Length = 322
Score = 31.1 bits (67), Expect = 0.70
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = -1
Query: 438 RSHDLRGLYLLVCDLSALADAPVSDLPVRLVNFADRAHWADGWVVRYIFFGDRTPVAIIV 259
R ++L + ++V D+S D + + F D D W+ RY F G P A ++
Sbjct: 178 RENELSNVEIIVADISKFEMERSFDRIISIEMFEDNNE--DDWITRYFFTGGTMPSANLL 235
Query: 258 L--ATDCSVA 235
L D S+A
Sbjct: 236 LYFQDDVSIA 245
>02_05_1265 -
35326506-35326773,35326944-35327109,35327194-35327351,
35327779-35327966,35328046-35328156,35328311-35328476,
35328718-35328885,35329374-35330623
Length = 824
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 471 PSVEARTRSTDAGFMTVETTNFPHEGSNHTPAHHYSEFKFK 593
P + R++D G FP EGS TP+H +FK+K
Sbjct: 425 PIQKREVRASDFGPRASFWMTFPKEGSRLTPSHPAEDFKWK 465
>12_01_0830 -
7678038-7678444,7678996-7680943,7681231-7681983,
7682701-7682824,7683590-7683723
Length = 1121
Score = 30.7 bits (66), Expect = 0.92
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 475 ASKPERDLLMQAS*PSRRRISPTKDRTTRPPITIPSSNSKR 597
+S+ L +Q+S PSRR +P ++T PP PS S+R
Sbjct: 125 SSRCSPPLSLQSSTPSRRSPTPPGNKTLTPPRRSPSPASRR 165
>03_05_0845 -
28155065-28155374,28156201-28156342,28156375-28156505,
28156591-28156784,28156859-28156969,28157234-28157399,
28157501-28157668,28157766-28158787
Length = 747
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +1
Query: 391 GEITYKKIQSSQIMGSIQLGIQHAIGGLASKPERDLLMQAS*PSRR---RISPTKDRTTR 561
G+ K ++ ++M +QLGI+H++G A+ P R+L P + R P + T
Sbjct: 320 GQTISKGHKNYELMLQLQLGIRHSVGKSAAVPMRELSPADFDPKEKFWTRFPPEGSKVTP 379
Query: 562 P 564
P
Sbjct: 380 P 380
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 528 TNFPHEGSNHTPAHHYSEFKFK 593
T FP EGS TP H S+F++K
Sbjct: 368 TRFPPEGSKVTPPHSSSDFRWK 389
>03_02_0459 + 8649448-8651994
Length = 848
Score = 25.0 bits (52), Expect(2) = 2.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 550 DPSWGKFVVSTVMKPASVDRVR 485
DP WG ++ST++K D +R
Sbjct: 751 DPDWGFGILSTLVKLEDSDHIR 772
Score = 22.6 bits (46), Expect(2) = 2.5
Identities = 10/33 (30%), Positives = 13/33 (39%)
Frame = -3
Query: 370 VRSSGPTCELC*SRPLGRRLGRKVHFFRRSNSC 272
+R TC +C +G R H F N C
Sbjct: 771 IRHGRHTCSICRYPIIGSRFKETKHSFSLCNRC 803
>04_04_0895 - 29168107-29168229,29168617-29170068
Length = 524
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +2
Query: 188 DHIEVMESSVLKKSENATEQSVA---RTMIATGVRSPKKMYLTTQPSAQWARSAKFTS 352
D +M+ S+ N SVA +++ GV SP++M + + W R A +T+
Sbjct: 347 DPAGIMQQSICYDGGNRWTVSVAWGFAVLVSRGVMSPREMEMPARTFLNWYRRADYTA 404
>01_06_1428 -
37301697-37302175,37302300-37302471,37302570-37303403,
37303847-37304012,37304334-37304573,37304765-37304905,
37305623-37305735,37306549-37306614,37307242-37307480,
37307615-37307897
Length = 910
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = -2
Query: 581 LGIVMGGRVVRSFVGEIRRLDGHEACISRSRSGFDARPPIACWMPSCIDPMICEDCIFL 405
+G MGG+V F R D E+ + G + P+ W P D M+C++ +++
Sbjct: 144 VGHSMGGKVALDFAESCSRGDYGESADLPKQLG---QTPLEGWFPDNYDRMLCQEILWV 199
>01_01_0267 + 2201404-2202501
Length = 365
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = +2
Query: 275 GVRSPKKMYLTTQPSAQWARSAKFTSRTGRSDTGASAR--AERSHTRRYSPRR 427
G+R + M QP+ WAR F SD G R + H ++ P R
Sbjct: 159 GLRRGRGMGARAQPTPSWAREPLFEKAVTPSDVGKLNRLVVPKQHAEKHFPLR 211
>11_06_0645 -
25814302-25814759,25814853-25815005,25815032-25815214,
25815342-25815531,25815624-25815784,25816136-25816623,
25817035-25817075
Length = 557
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 304 YDPAVGPMGAISKVHKSDRKIGHRRVGEGGEITYKKIQSSQIMGS 438
Y GP G+ S +++ +GH V E G I+Y +I + GS
Sbjct: 450 YTETPGPGGSYSA---AEQNLGHLSVSEAGSISYNEISAVNEAGS 491
>02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178
Length = 1143
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 206 ESSVLKKSENATE-QSVARTMIATGVRSPKKMYLTTQPSAQW-ARSAKFTSRTG 361
E +LK E A + V T+I+ G+R T PS +W +A+ TSR+G
Sbjct: 949 EEQMLKVLEIACKCVKVDTTIISCGIREYHTSTNATSPSLEWEENAAQLTSRSG 1002
>01_06_0922 - 33022709-33023545
Length = 278
Score = 28.7 bits (61), Expect = 3.7
Identities = 24/79 (30%), Positives = 32/79 (40%)
Frame = +2
Query: 185 SDHIEVMESSVLKKSENATEQSVARTMIATGVRSPKKMYLTTQPSAQWARSAKFTSRTGR 364
SD M + +SE A+E SVA + + RSP K +P + A SR R
Sbjct: 90 SDLGSCMSLATDDRSEAASESSVATSSVTGPERSPGKPARRKRPVSVSGELAHAISRRDR 149
Query: 365 SDTGASARAERSHTRRYSP 421
+ A RS SP
Sbjct: 150 AAAAAYGVRSRSARASASP 168
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +3
Query: 426 DHGIDTARHPARYRRPSVEARTRSTDAGFMTVETTNFPHEGSNHTPAHH 572
DHG +R R+ S+E + + F+ +TT P GS T HH
Sbjct: 476 DHGKVRSRKNRSERQESLEPGSSGRSSDFIDQDTTESP-SGSKSTGRHH 523
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 455 WMPSCIDPMICEDCIFLYVISPPSP 381
WM CI P++ DC Y S P+P
Sbjct: 173 WMKPCIGPVLACDCEPEYFDSDPAP 197
>01_06_0276 -
28084746-28085003,28085103-28085357,28085531-28085798,
28085948-28086253,28086369-28086643,28087034-28087252,
28087486-28089015,28089236-28089397,28089512-28089666,
28090195-28091064,28091363-28091832,28091917-28091981,
28092105-28092448,28092531-28092710,28092817-28092920,
28093053-28093162,28093648-28093744,28094138-28094238,
28094324-28094476,28094561-28094674,28094795-28094884,
28094960-28095307
Length = 2157
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 329 ARSAKFTSRTGRSDTGASARAERSHTRRYSPRRS 430
A+ + RT + TGA RA RSH+ +P R+
Sbjct: 4 AQGMAYKLRTDAAPTGAGRRARRSHSSVAAPYRA 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,209,777
Number of Sequences: 37544
Number of extensions: 343387
Number of successful extensions: 1118
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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