Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0842
         (597 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.005
SB_6433| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.18 
SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_3363| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.53 
SB_13250| Best HMM Match : Toxin_22 (HMM E-Value=1.2)                  29   3.8  
SB_50666| Best HMM Match : ig (HMM E-Value=2.8e-20)                    28   5.0  
SB_54365| Best HMM Match : PI-PLC-Y (HMM E-Value=0)                    28   5.0  
SB_29206| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)                 28   6.6  
SB_28204| Best HMM Match : ig (HMM E-Value=5.8e-10)                    28   6.6  
SB_30676| Best HMM Match : DUF999 (HMM E-Value=6.7)                    27   8.7  
SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  
SB_31688| Best HMM Match : WD40 (HMM E-Value=3.3e-10)                  27   8.7  
SB_14696| Best HMM Match : ETS_PEA3_N (HMM E-Value=8.5)                27   8.7  

>SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 25/56 (44%), Positives = 30/56 (53%)
 Frame = +1

Query: 340 KVHKSDRKIGHRRVGEGGEITYKKIQSSQIMGSIQLGIQHAIGGLASKPERDLLMQ 507
           KV     K+GHRRV E GE TYKK                 +G L++KPERD+LMQ
Sbjct: 47  KVTTPKSKLGHRRVDEKGETTYKK-----------------VGRLSAKPERDVLMQ 85


>SB_6433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 41

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 15/24 (62%), Positives = 16/24 (66%)
 Frame = +1

Query: 340 KVHKSDRKIGHRRVGEGGEITYKK 411
           KV     K+GHRRV E GE TYKK
Sbjct: 18  KVTTPKSKLGHRRVDEKGETTYKK 41


>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1277

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
 Frame = +2

Query: 197  EVMESSVLKKSENATEQSVARTMIATGVRSPKKMYLT---TQPSAQWARS-AKFTSRTGR 364
            +V   S  ++S N T     R+   T   + +    T    + S+   RS  + +S T R
Sbjct: 1051 QVTTRSHTRRSSNTTRTHTRRSSNTTRGHTRRSSNTTRSHARRSSNTTRSHTRRSSNTTR 1110

Query: 365  SDTGASARAERSHTRRYS 418
            S TG S+   RSHTRR S
Sbjct: 1111 SHTGRSSNTTRSHTRRSS 1128



 Score = 32.3 bits (70), Expect = 0.31
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = +2

Query: 221 KKSENATEQSVARTMIATGV---RSPKKMYLTTQPSAQWARSAKFTSRTGRSDTGASARA 391
           K+S N T +   R+   T     RS K++ +T           + +S T RS T  S+  
Sbjct: 559 KRSSNTTRRHTGRSSNTTRRHTRRSSKQLAVTQDGQVTTRGHTRRSSNTTRSHTRRSSHT 618

Query: 392 ERSHTRRYS 418
            R HTRR S
Sbjct: 619 TRGHTRRSS 627



 Score = 31.1 bits (67), Expect = 0.71
 Identities = 36/112 (32%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
 Frame = +2

Query: 212  SVLKKSENATEQSVARTMIATGVRSPKKMYLT---TQPSAQWARS-AKFTSRTGRSDTGA 379
            S+ ++S N T     R+   T   + +    T   T+ S+   RS  + +S T R  T  
Sbjct: 697  SLTRRSSNTTRGHTRRSSNTTRSHTRRSSNTTRSLTRRSSNTTRSHTRRSSNTTRRHTRR 756

Query: 380  SARAERSHTRRYS-PRRSWDRYS*ASSTL*EA*RRSPNAIY*CRLHDRRDDE 532
            S+   R HTRR S   RS  R S  S+T     RRS N     R H RR  +
Sbjct: 757  SSNTTRRHTRRSSNTTRSHTRRS--SNTTRGHTRRSSNT---TRSHTRRSSK 803



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 30/74 (40%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +2

Query: 308 TQPSAQWARS-AKFTSRTGRSDTGASARAERSHTRRYS-PRRSWDRYS*ASSTL*EA*RR 481
           T+ S+   RS  + +S T R  T  S+   RSHTRR S   RS  R S  S+T     RR
Sbjct: 688 TRRSSNTTRSLTRRSSNTTRGHTRRSSNTTRSHTRRSSNTTRSLTRRS--SNTTRSHTRR 745

Query: 482 SPNAIY*CRLHDRR 523
           S N     R H RR
Sbjct: 746 SSNT---TRRHTRR 756


>SB_3363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
 Frame = +2

Query: 47  LERILNSGDTAK-CEVNHENRYCAHKRIE*YLNTK*CKSETKMASGDSD-HIEVMESSVL 220
           L R L SGD A  C V H  R+CAH+ I   L T+     +   +   D H+  +++S+L
Sbjct: 80  LRRTLESGDFADVCFVIHGQRFCAHRAI---LTTRSSYFASMFETKWKDKHVITLKNSLL 136

Query: 221 KKSENATEQSVARTMIATGVRSPKKMYLTTQ 313
               +  +  V++TM    +    K+++  Q
Sbjct: 137 LFHLDRLDVDVSQTMDVLLLAKQCKLHVLKQ 167


>SB_13250| Best HMM Match : Toxin_22 (HMM E-Value=1.2)
          Length = 376

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 337 SKVHKSDRKIGHRRVGEGGEITYKKIQSSQIMG 435
           S  HK+ +K+GHR  G+G  + +K  + +   G
Sbjct: 340 SVYHKTTKKLGHRDTGKGESVYHKTRKKASTSG 372


>SB_50666| Best HMM Match : ig (HMM E-Value=2.8e-20)
          Length = 293

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +2

Query: 233 NATEQSVARTMIATGVRSPKKMYLTTQPSAQWARSAKFTSRTGRSDTGA---SARAERSH 403
           N TE +V    ++ GV  P  +  +     + A  +   S  GR+DTG+   +A++E  H
Sbjct: 14  NETESTVLSCSVSEGVAPPPSVTWSRDGQQRGAGDSLTISSAGRADTGSYRCTAKSEDLH 73

Query: 404 TRRYSP 421
            +   P
Sbjct: 74  QQYGHP 79


>SB_54365| Best HMM Match : PI-PLC-Y (HMM E-Value=0)
          Length = 593

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
 Frame = +2

Query: 230 ENATEQSVARTMIATGVRSPKKMYL----TTQPSAQWARS-AKFTSRTGRSDTGASARAE 394
           +N+ + S+ R  +    R P+++Y      ++ S Q   S A++T  T ++   ++ R  
Sbjct: 39  QNSRQGSIKRQSVKVNTRKPREVYHRYPEASRGSPQIHGSLARYTPNTRKTRVYSNTRKP 98

Query: 395 RSHTRRYSPRRS 430
           R H    +PR++
Sbjct: 99  REHDANKNPRKT 110


>SB_29206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -3

Query: 340 C*SRPLGRRLGRKVHFFRRSNSC--RDHRPRD 251
           C +R  G++ GR   + R+   C  R+HRPRD
Sbjct: 30  CQTREYGQKTGRMRPYDRQRRGCIVRNHRPRD 61


>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
          Length = 440

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 526 RRISPTKDRTTRPPITIPSSNSKR 597
           R +S +K R +R PIT   SNSKR
Sbjct: 392 RSLSKSKKRRSRSPITKKESNSKR 415


>SB_28204| Best HMM Match : ig (HMM E-Value=5.8e-10)
          Length = 189

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +2

Query: 233 NATEQSVARTMIATGVRSPKKMYLTTQPSAQWARSAKFTSRTGRSDTGASARAERS 400
           N TE +V    ++ GV  P  +  +     + A  +   S  GR+DTG+     RS
Sbjct: 14  NETESTVLSCSVSEGVAPPPSVTWSRDGQQRGAGDSLTISSAGRADTGSYRCTARS 69


>SB_30676| Best HMM Match : DUF999 (HMM E-Value=6.7)
          Length = 310

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 581 LGIVMGGRVVRSFVGEIRRLDGHEAC 504
           +G V+GGRV  S V E   LDG   C
Sbjct: 75  IGSVIGGRVTYSTVDEYDALDGELVC 100


>SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +2

Query: 272 TGVRSPKKMYLTTQPSAQWARSAKFTSRTGRSD---TGASARAERSHTRRYSPRRS 430
           +G    ++  L T+PS   A SA  T+ +GR+    T ASAR   +   R   R S
Sbjct: 205 SGDEEGRRRGLRTRPSPSTASSANETNESGRTTHARTAASARGRGNRRGRTGTRSS 260


>SB_31688| Best HMM Match : WD40 (HMM E-Value=3.3e-10)
          Length = 841

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 501 DAGFMTVETTNFPHEGSNHTP-AHHYSE 581
           D G  T  TTN  HE + HT  +HHY +
Sbjct: 454 DTGTFTRITTNPMHEPAQHTSVSHHYDD 481


>SB_14696| Best HMM Match : ETS_PEA3_N (HMM E-Value=8.5)
          Length = 375

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 285 RRKKCTLRPSRRPNGRDQQSSQVG 356
           RR+K   RPS+RP   D+++S+ G
Sbjct: 15  RRRKGRGRPSKRPRREDEENSEKG 38


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,626,937
Number of Sequences: 59808
Number of extensions: 397439
Number of successful extensions: 1591
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1582
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)