Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0842
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003130-8|AAB54130.2|  611|Caenorhabditis elegans Pip kinase pr...    62   2e-10
U64844-9|AAB18309.1|  330|Caenorhabditis elegans Serpentine rece...    31   0.47 
AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical...    31   0.82 
AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical...    31   0.82 
AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical ...    31   0.82 
AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical ...    31   0.82 
Z82268-5|CAB05195.1|  304|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical p...    29   2.5  
Z81138-1|CAB03475.1|  304|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81138-4|CAB03474.1|  304|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z81138-3|CAB63321.1|  304|Caenorhabditis elegans Hypothetical pr...    28   4.4  
U41279-9|AAL02437.1|  220|Caenorhabditis elegans Hypothetical pr...    28   4.4  
U41279-8|AAL02436.1|  307|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical...    28   5.8  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    27   7.7  
AC006696-10|AAF39990.1|  228|Caenorhabditis elegans Hypothetical...    27   7.7  

>AF003130-8|AAB54130.2|  611|Caenorhabditis elegans Pip kinase
           protein 1 protein.
          Length = 611

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 26/49 (53%), Positives = 39/49 (79%)
 Frame = +1

Query: 361 KIGHRRVGEGGEITYKKIQSSQIMGSIQLGIQHAIGGLASKPERDLLMQ 507
           K+GHRR+ E G ++YKK+ ++ +M +IQLGI ++IG LAS P RD+L+Q
Sbjct: 66  KLGHRRIDEQGGVSYKKVPTNALMQAIQLGISNSIGSLASLPNRDVLLQ 114



 Score = 31.9 bits (69), Expect = 0.36
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 510 FMTVETTNFPHEGSNHTPAHHYSEFKFKT 596
           F  V+   FP  GS  TP+H + +F+F+T
Sbjct: 116 FEKVDIVAFPAAGSTITPSHSFGDFRFRT 144


>U64844-9|AAB18309.1|  330|Caenorhabditis elegans Serpentine
           receptor, class h protein212 protein.
          Length = 330

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 14/60 (23%), Positives = 29/60 (48%)
 Frame = -3

Query: 232 LRLFQNRTFHHFYVI*IARSHFCFTFTSLCIQVLFNSFMCTITILMVHFALRGITTIQYS 53
           L  F N+  ++F VI ++   F  T   +CI V +  F      ++ H  +  +++++ S
Sbjct: 267 LLYFHNQAINNFIVIIVSSHGFFSTIVMICIHVPYREFTLRWLTVLAHVRMENLSSVRPS 326


>AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical
           protein T08B2.5f protein.
          Length = 838

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
 Frame = +2

Query: 206 ESSVLKKSENATEQSVARTMIATGVRSPKKMYLTTQPSAQWARSAKFTSRTGRSDTGASA 385
           E S+ +  EN + +S +    A   RS  +     +  ++ + S + TSR  R D  +  
Sbjct: 9   EISIPRSGENKSSRSPSWAREARRSRSRSRDRRGGRSRSR-SPSRRRTSRDRRDDRSSRR 67

Query: 386 RAERSHTRRYSPRRSWDRYS*ASSTL*EA*RRSPNAIY*CR-LHDRRDD 529
           R +RSH+R  SP  S +  S  SS+   + RR   +    R  + RRDD
Sbjct: 68  RRDRSHSRSRSPPSSANGSSHWSSSNRHSRRRRSRSYSRERDRNSRRDD 116


>AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical
           protein T08B2.5c protein.
          Length = 866

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
 Frame = +2

Query: 206 ESSVLKKSENATEQSVARTMIATGVRSPKKMYLTTQPSAQWARSAKFTSRTGRSDTGASA 385
           E S+ +  EN + +S +    A   RS  +     +  ++ + S + TSR  R D  +  
Sbjct: 37  EISIPRSGENKSSRSPSWAREARRSRSRSRDRRGGRSRSR-SPSRRRTSRDRRDDRSSRR 95

Query: 386 RAERSHTRRYSPRRSWDRYS*ASSTL*EA*RRSPNAIY*CR-LHDRRDD 529
           R +RSH+R  SP  S +  S  SS+   + RR   +    R  + RRDD
Sbjct: 96  RRDRSHSRSRSPPSSANGSSHWSSSNRHSRRRRSRSYSRERDRNSRRDD 144


>AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical
           protein T08B2.5a protein.
          Length = 924

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
 Frame = +2

Query: 206 ESSVLKKSENATEQSVARTMIATGVRSPKKMYLTTQPSAQWARSAKFTSRTGRSDTGASA 385
           E S+ +  EN + +S +    A   RS  +     +  ++ + S + TSR  R D  +  
Sbjct: 95  EISIPRSGENKSSRSPSWAREARRSRSRSRDRRGGRSRSR-SPSRRRTSRDRRDDRSSRR 153

Query: 386 RAERSHTRRYSPRRSWDRYS*ASSTL*EA*RRSPNAIY*CR-LHDRRDD 529
           R +RSH+R  SP  S +  S  SS+   + RR   +    R  + RRDD
Sbjct: 154 RRDRSHSRSRSPPSSANGSSHWSSSNRHSRRRRSRSYSRERDRNSRRDD 202


>AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical
           protein T08B2.5b protein.
          Length = 925

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
 Frame = +2

Query: 206 ESSVLKKSENATEQSVARTMIATGVRSPKKMYLTTQPSAQWARSAKFTSRTGRSDTGASA 385
           E S+ +  EN + +S +    A   RS  +     +  ++ + S + TSR  R D  +  
Sbjct: 96  EISIPRSGENKSSRSPSWAREARRSRSRSRDRRGGRSRSR-SPSRRRTSRDRRDDRSSRR 154

Query: 386 RAERSHTRRYSPRRSWDRYS*ASSTL*EA*RRSPNAIY*CR-LHDRRDD 529
           R +RSH+R  SP  S +  S  SS+   + RR   +    R  + RRDD
Sbjct: 155 RRDRSHSRSRSPPSSANGSSHWSSSNRHSRRRRSRSYSRERDRNSRRDD 203


>Z82268-5|CAB05195.1|  304|Caenorhabditis elegans Hypothetical
           protein F52B11.4 protein.
          Length = 304

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +2

Query: 11  SFRKVIDFFL-IKLERILNSGDTAKCEVNHENRYCAHKRIE*YLNTK*CKSETKMAS 178
           +F  V  F L I L  + N  D  K ++NHE ++C H   + +      +S  K AS
Sbjct: 19  TFSVVAVFSLCITLPLVYNYVDGIKTQINHEIKFCKHSARDIFAEVNHIRSSPKNAS 75


>U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical
           protein C37C3.1 protein.
          Length = 470

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +2

Query: 254 ARTMIATGVRSPKKMYLTTQPSAQWARSAKFTSRTGRSDTGAS-ARAERSHTRRYSPRRS 430
           +R +  +G R+P + +     S    RS + +    RS       R  RS +R  +P R+
Sbjct: 316 SRHLSRSGSRTPAQRHSRRSESTSRRRSGRHSRSRSRSPPRKRPVRRSRSRSRSRTPNRN 375

Query: 431 WDR 439
           W R
Sbjct: 376 WTR 378


>Z81138-1|CAB03475.1|  304|Caenorhabditis elegans Hypothetical
           protein W05B2.1 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 11  SFRKVIDFFL-IKLERILNSGDTAKCEVNHENRYCAHKRIE*YLNTK*CKSETKMAS 178
           +F  V  F L I L  + N  D  K ++NHE ++C H   + +      +   K AS
Sbjct: 19  TFSTVAVFSLCITLPLVYNYVDGIKTQINHEIKFCKHSARDIFAEVNHIRGSPKNAS 75


>Z81138-4|CAB03474.1|  304|Caenorhabditis elegans Hypothetical
           protein W05B2.6 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 11  SFRKVIDFFL-IKLERILNSGDTAKCEVNHENRYCAHKRIE*YLNTK*CKSETKMAS 178
           +F  V  F L I L  + N  D  K ++NHE ++C H   + +      +   K AS
Sbjct: 19  TFSVVAVFSLCITLPLVYNYVDGIKTQINHEIKFCKHSARDIFAEVNHIRGSPKNAS 75


>Z81138-3|CAB63321.1|  304|Caenorhabditis elegans Hypothetical
           protein W05B2.5 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 11  SFRKVIDFFL-IKLERILNSGDTAKCEVNHENRYCAHKRIE*YLNTK*CKSETKMAS 178
           +F  V  F L I L  + N  D  K ++NHE ++C H   + +      +   K AS
Sbjct: 19  TFSVVAVFSLCITLPLVYNYVDGIKTQINHEIKFCKHSARDIFAEVNHIRGSPKNAS 75


>U41279-9|AAL02437.1|  220|Caenorhabditis elegans Hypothetical
           protein C17C3.12c protein.
          Length = 220

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
 Frame = +1

Query: 328 GAISKVHKSDRKIGHRRV----GEGGEITYKKIQSSQIMGSIQLGIQHAIGGLASKPERD 495
           G I++VH +  ++    +    G+G +   + + +S+I+   Q+G+QH I  + ++ E  
Sbjct: 71  GTIAQVHLNSVRVPKTSIVGEYGKGYKYAIEVLNASRIVIGAQMGLQHQIAKIQTEIEAA 130

Query: 496 LLM 504
            LM
Sbjct: 131 RLM 133


>U41279-8|AAL02436.1|  307|Caenorhabditis elegans Hypothetical
           protein C17C3.12b protein.
          Length = 307

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
 Frame = +1

Query: 328 GAISKVHKSDRKIGHRRV----GEGGEITYKKIQSSQIMGSIQLGIQHAIGGLASKPERD 495
           G I++VH +  ++    +    G+G +   + + +S+I+   Q+G+QH I  + ++ E  
Sbjct: 158 GTIAQVHLNSVRVPKTSIVGEYGKGYKYAIEVLNASRIVIGAQMGLQHQIAKIQTEIEAA 217

Query: 496 LLM 504
            LM
Sbjct: 218 RLM 220


>Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical protein
            Y6B3B.1 protein.
          Length = 1829

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = +3

Query: 306  RPSRRPNGRDQQSSQVGPEDRTPAXXXXXXDHIQEDTVLADHGIDTA 446
            RPS RP  R Q+ SQ   E           DH   D  + D  IDT+
Sbjct: 1622 RPSFRPYRRPQERSQGSHEAAQACRRCSEADHHPSDDSIIDLMIDTS 1668


>AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical
            protein Y6B3B.1 protein.
          Length = 1829

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = +3

Query: 306  RPSRRPNGRDQQSSQVGPEDRTPAXXXXXXDHIQEDTVLADHGIDTA 446
            RPS RP  R Q+ SQ   E           DH   D  + D  IDT+
Sbjct: 1622 RPSFRPYRRPQERSQGSHEAAQACRRCSEADHHPSDDSIIDLMIDTS 1668


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 528 TNFPHEGSNHTPAHH 572
           T+  H GS+H+PAHH
Sbjct: 489 THHGHHGSHHSPAHH 503



 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 528 TNFPHEGSNHTPAHH 572
           T+  H GS+H+PAHH
Sbjct: 547 THHGHHGSHHSPAHH 561


>AC006696-10|AAF39990.1|  228|Caenorhabditis elegans Hypothetical
           protein W08E12.1 protein.
          Length = 228

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 20  KVIDFFLIKLERILNS-GDTAKCEVNHEN 103
           K+ +    + + I+NS GD  KC+V HEN
Sbjct: 101 KIFEEISKECDHIMNSAGDCEKCQVEHEN 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,732,824
Number of Sequences: 27780
Number of extensions: 291342
Number of successful extensions: 960
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)