Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0841
(608 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe... 60 2e-10
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-... 51 2e-07
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p... 41 1e-04
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d... 41 2e-04
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ... 40 2e-04
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 39 7e-04
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 31 0.13
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 28 0.93
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 26 3.7
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 3.7
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 26 5.0
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 25 6.5
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 25 8.7
>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 60.5 bits (140), Expect = 2e-10
Identities = 28/59 (47%), Positives = 41/59 (69%)
Frame = +2
Query: 305 GEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVV 481
GEVL+++KA LN++DLI+ +G P + P + G + AG IE+VGE+V F+ GD VV
Sbjct: 31 GEVLVKLKAASLNYRDLIITKGLYPLPLQLPVVPGSDGAGIIEKVGEDVEGFEKGDSVV 89
>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
oxidoreductase/ARE-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 329
Score = 50.8 bits (116), Expect = 2e-07
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Frame = +2
Query: 266 VKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGE 445
++++ K P ++I+ GLN+ D +R G +P P+I G E AG + VG+
Sbjct: 17 LQVITKEIPKPAPNGLVIKNAYAGLNYIDTYLRTGLYTAP--LPYIPGKEAAGVVAAVGD 74
Query: 446 NV-TNFKVGDQVVALPEYRAWASWCLYRPSTCTRCPKECLP 565
V +FKVGD+VV L + A+A + P+T E +P
Sbjct: 75 KVEADFKVGDRVVYLTPFGAYAQYTNV-PTTLVSKVSEKIP 114
>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 360
Score = 41.1 bits (92), Expect = 1e-04
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Frame = +2
Query: 248 LRGLKTVKILKKPEPTVGEG-EVLIRVKACGLNFQDLIV-RQGAI-DSPPKTPFILGFEC 418
LR I +P T+ + +V + +KA G+ D+ ++G I D K P ILG E
Sbjct: 10 LRKKMDTAIEDRPGQTLTDDHQVKVAIKATGICGSDVHYWKEGGIGDFILKKPMILGHES 69
Query: 419 AGEIEQVGENVTNFKVGDQVVALP 490
AG + +VG+ V++ K GD V P
Sbjct: 70 AGVVVEVGKGVSSLKPGDPVAVEP 93
>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 40.7 bits (91), Expect = 2e-04
Identities = 25/60 (41%), Positives = 31/60 (51%)
Frame = +2
Query: 308 EVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVVAL 487
EV I++ G+ D G D P ILG E AG +E VG VT +VGD V+AL
Sbjct: 39 EVRIKIVNSGVCHTDAYTLSGK-DPEGLFPVILGHEGAGIVESVGPQVTTVQVGDPVIAL 97
>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 40.3 bits (90), Expect = 2e-04
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = +2
Query: 254 GLKTVKILKKPEPTVGEG-EVLIRVKACGL-NFQDLIVRQGAIDSPPKTPFILGFECAGE 427
G VKI + P+PT+ +V+++ AC + + D + G + K ILG E G
Sbjct: 44 GPLNVKIAEVPKPTITHPKDVIVKTTACTICSGSDSHIFSGEMPGIEKGA-ILGHESCGI 102
Query: 428 IEQVGENVTNFKVGDQVV 481
+ + G+ V N ++GD+VV
Sbjct: 103 VAEKGDEVNNLEIGDRVV 120
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 38.7 bits (86), Expect = 7e-04
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +2
Query: 308 EVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVVAL 487
EV ++V + D G +D P +LG E AG +E +GE V N + GD V+ L
Sbjct: 36 EVRVKVDWSAVCHTDAYTLSG-VDPEGAFPIVLGHEGAGIVESIGEGVINVRPGDHVILL 94
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 31.1 bits (67), Expect = 0.13
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +2
Query: 308 EVLIRVKACGL-NFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVVA 484
EV++RVK C + + QD++ + A+D P T I E ++ + EN K+G +
Sbjct: 1055 EVVLRVKMCQMGDVQDVLGK--ALDPPSSTNIIRALEKLHQVGALSENEKLTKLGKFLSQ 1112
Query: 485 LP 490
LP
Sbjct: 1113 LP 1114
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 28.3 bits (60), Expect = 0.93
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +2
Query: 449 VTNFKVGDQVVALPEYRAWASWCL 520
++NF+ GD +P ++ W ++CL
Sbjct: 348 LSNFREGDSAKNIPTHKLWCTYCL 371
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 215 AQGNARRSTYRLRGLKTVK--ILKKPEPTVGEGEVL 316
AQGN T +RGL+T+K ILK + + E L
Sbjct: 735 AQGNIATKTPHVRGLRTIKKEILKLVDAYISRAEDL 770
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = +2
Query: 458 FKVGDQVVALPEYRAWASWCLYRPSTCTR---CPKECLPWMLL 577
F GD++VA+ A W + CT CP C P L+
Sbjct: 75 FPYGDKMVAVTPDEGNAGWAMSPDQYCTAGTWCPYACEPGYLM 117
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +1
Query: 520 VPAQYVYALPEGMSALDAVAHHHELRGG 603
+PA+ YA + +L+ H H++ GG
Sbjct: 616 IPARPFYAQSGSLQSLNTTQHSHQISGG 643
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 325 ESLRPKLPRFD-SSSGRHRLSTEDSFHL 405
+S R L F SS+ RH++STE FH+
Sbjct: 216 QSFRGPLEPFKYSSTTRHKVSTESIFHV 243
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 426 KSSKLAKMSPILRWATKWWLS 488
+SS L K+ P+LR+ ++WL+
Sbjct: 154 RSSHLLKVRPLLRFLIEFWLN 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,108
Number of Sequences: 5004
Number of extensions: 46131
Number of successful extensions: 131
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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