BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0841 (608 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe... 60 2e-10 SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-... 51 2e-07 SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p... 41 1e-04 SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d... 41 2e-04 SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ... 40 2e-04 SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 39 7e-04 SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 31 0.13 SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 28 0.93 SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 26 3.7 SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 3.7 SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 26 5.0 SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 25 6.5 SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 25 8.7 >SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual Length = 346 Score = 60.5 bits (140), Expect = 2e-10 Identities = 28/59 (47%), Positives = 41/59 (69%) Frame = +2 Query: 305 GEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVV 481 GEVL+++KA LN++DLI+ +G P + P + G + AG IE+VGE+V F+ GD VV Sbjct: 31 GEVLVKLKAASLNYRDLIITKGLYPLPLQLPVVPGSDGAGIIEKVGEDVEGFEKGDSVV 89 >SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-binding protein |Schizosaccharomyces pombe|chr 3|||Manual Length = 329 Score = 50.8 bits (116), Expect = 2e-07 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 1/101 (0%) Frame = +2 Query: 266 VKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGE 445 ++++ K P ++I+ GLN+ D +R G +P P+I G E AG + VG+ Sbjct: 17 LQVITKEIPKPAPNGLVIKNAYAGLNYIDTYLRTGLYTAP--LPYIPGKEAAGVVAAVGD 74 Query: 446 NV-TNFKVGDQVVALPEYRAWASWCLYRPSTCTRCPKECLP 565 V +FKVGD+VV L + A+A + P+T E +P Sbjct: 75 KVEADFKVGDRVVYLTPFGAYAQYTNV-PTTLVSKVSEKIP 114 >SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual Length = 360 Score = 41.1 bits (92), Expect = 1e-04 Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 3/84 (3%) Frame = +2 Query: 248 LRGLKTVKILKKPEPTVGEG-EVLIRVKACGLNFQDLIV-RQGAI-DSPPKTPFILGFEC 418 LR I +P T+ + +V + +KA G+ D+ ++G I D K P ILG E Sbjct: 10 LRKKMDTAIEDRPGQTLTDDHQVKVAIKATGICGSDVHYWKEGGIGDFILKKPMILGHES 69 Query: 419 AGEIEQVGENVTNFKVGDQVVALP 490 AG + +VG+ V++ K GD V P Sbjct: 70 AGVVVEVGKGVSSLKPGDPVAVEP 93 >SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual Length = 380 Score = 40.7 bits (91), Expect = 2e-04 Identities = 25/60 (41%), Positives = 31/60 (51%) Frame = +2 Query: 308 EVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVVAL 487 EV I++ G+ D G D P ILG E AG +E VG VT +VGD V+AL Sbjct: 39 EVRIKIVNSGVCHTDAYTLSGK-DPEGLFPVILGHEGAGIVESVGPQVTTVQVGDPVIAL 97 >SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual Length = 423 Score = 40.3 bits (90), Expect = 2e-04 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Frame = +2 Query: 254 GLKTVKILKKPEPTVGEG-EVLIRVKACGL-NFQDLIVRQGAIDSPPKTPFILGFECAGE 427 G VKI + P+PT+ +V+++ AC + + D + G + K ILG E G Sbjct: 44 GPLNVKIAEVPKPTITHPKDVIVKTTACTICSGSDSHIFSGEMPGIEKGA-ILGHESCGI 102 Query: 428 IEQVGENVTNFKVGDQVV 481 + + G+ V N ++GD+VV Sbjct: 103 VAEKGDEVNNLEIGDRVV 120 >SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual Length = 378 Score = 38.7 bits (86), Expect = 7e-04 Identities = 21/60 (35%), Positives = 30/60 (50%) Frame = +2 Query: 308 EVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVVAL 487 EV ++V + D G +D P +LG E AG +E +GE V N + GD V+ L Sbjct: 36 EVRVKVDWSAVCHTDAYTLSG-VDPEGAFPIVLGHEGAGIVESIGEGVINVRPGDHVILL 94 >SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces pombe|chr 2|||Manual Length = 1428 Score = 31.1 bits (67), Expect = 0.13 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Frame = +2 Query: 308 EVLIRVKACGL-NFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVVA 484 EV++RVK C + + QD++ + A+D P T I E ++ + EN K+G + Sbjct: 1055 EVVLRVKMCQMGDVQDVLGK--ALDPPSSTNIIRALEKLHQVGALSENEKLTKLGKFLSQ 1112 Query: 485 LP 490 LP Sbjct: 1113 LP 1114 >SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 695 Score = 28.3 bits (60), Expect = 0.93 Identities = 8/24 (33%), Positives = 16/24 (66%) Frame = +2 Query: 449 VTNFKVGDQVVALPEYRAWASWCL 520 ++NF+ GD +P ++ W ++CL Sbjct: 348 LSNFREGDSAKNIPTHKLWCTYCL 371 >SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1078 Score = 26.2 bits (55), Expect = 3.7 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%) Frame = +2 Query: 215 AQGNARRSTYRLRGLKTVK--ILKKPEPTVGEGEVL 316 AQGN T +RGL+T+K ILK + + E L Sbjct: 735 AQGNIATKTPHVRGLRTIKKEILKLVDAYISRAEDL 770 >SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 1131 Score = 26.2 bits (55), Expect = 3.7 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 3/43 (6%) Frame = +2 Query: 458 FKVGDQVVALPEYRAWASWCLYRPSTCTR---CPKECLPWMLL 577 F GD++VA+ A W + CT CP C P L+ Sbjct: 75 FPYGDKMVAVTPDEGNAGWAMSPDQYCTAGTWCPYACEPGYLM 117 >SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 803 Score = 25.8 bits (54), Expect = 5.0 Identities = 9/28 (32%), Positives = 16/28 (57%) Frame = +1 Query: 520 VPAQYVYALPEGMSALDAVAHHHELRGG 603 +PA+ YA + +L+ H H++ GG Sbjct: 616 IPARPFYAQSGSLQSLNTTQHSHQISGG 643 >SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces pombe|chr 3|||Manual Length = 595 Score = 25.4 bits (53), Expect = 6.5 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%) Frame = +1 Query: 325 ESLRPKLPRFD-SSSGRHRLSTEDSFHL 405 +S R L F SS+ RH++STE FH+ Sbjct: 216 QSFRGPLEPFKYSSTTRHKVSTESIFHV 243 >SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1049 Score = 25.0 bits (52), Expect = 8.7 Identities = 9/21 (42%), Positives = 16/21 (76%) Frame = +3 Query: 426 KSSKLAKMSPILRWATKWWLS 488 +SS L K+ P+LR+ ++WL+ Sbjct: 154 RSSHLLKVRPLLRFLIEFWLN 174 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,347,108 Number of Sequences: 5004 Number of extensions: 46131 Number of successful extensions: 131 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 128 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 130 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 268287866 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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