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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0841
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    60   2e-10
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    51   2e-07
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    41   1e-04
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    41   2e-04
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    40   2e-04
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    39   7e-04
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    31   0.13 
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    28   0.93 
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    26   3.7  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   3.7  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    26   5.0  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    25   6.5  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   8.7  

>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 28/59 (47%), Positives = 41/59 (69%)
 Frame = +2

Query: 305 GEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVV 481
           GEVL+++KA  LN++DLI+ +G    P + P + G + AG IE+VGE+V  F+ GD VV
Sbjct: 31  GEVLVKLKAASLNYRDLIITKGLYPLPLQLPVVPGSDGAGIIEKVGEDVEGFEKGDSVV 89


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
 Frame = +2

Query: 266 VKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGE 445
           ++++ K  P      ++I+    GLN+ D  +R G   +P   P+I G E AG +  VG+
Sbjct: 17  LQVITKEIPKPAPNGLVIKNAYAGLNYIDTYLRTGLYTAP--LPYIPGKEAAGVVAAVGD 74

Query: 446 NV-TNFKVGDQVVALPEYRAWASWCLYRPSTCTRCPKECLP 565
            V  +FKVGD+VV L  + A+A +    P+T      E +P
Sbjct: 75  KVEADFKVGDRVVYLTPFGAYAQYTNV-PTTLVSKVSEKIP 114


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
 Frame = +2

Query: 248 LRGLKTVKILKKPEPTVGEG-EVLIRVKACGLNFQDLIV-RQGAI-DSPPKTPFILGFEC 418
           LR      I  +P  T+ +  +V + +KA G+   D+   ++G I D   K P ILG E 
Sbjct: 10  LRKKMDTAIEDRPGQTLTDDHQVKVAIKATGICGSDVHYWKEGGIGDFILKKPMILGHES 69

Query: 419 AGEIEQVGENVTNFKVGDQVVALP 490
           AG + +VG+ V++ K GD V   P
Sbjct: 70  AGVVVEVGKGVSSLKPGDPVAVEP 93


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 25/60 (41%), Positives = 31/60 (51%)
 Frame = +2

Query: 308 EVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVVAL 487
           EV I++   G+   D     G  D     P ILG E AG +E VG  VT  +VGD V+AL
Sbjct: 39  EVRIKIVNSGVCHTDAYTLSGK-DPEGLFPVILGHEGAGIVESVGPQVTTVQVGDPVIAL 97


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
 Frame = +2

Query: 254 GLKTVKILKKPEPTVGEG-EVLIRVKACGL-NFQDLIVRQGAIDSPPKTPFILGFECAGE 427
           G   VKI + P+PT+    +V+++  AC + +  D  +  G +    K   ILG E  G 
Sbjct: 44  GPLNVKIAEVPKPTITHPKDVIVKTTACTICSGSDSHIFSGEMPGIEKGA-ILGHESCGI 102

Query: 428 IEQVGENVTNFKVGDQVV 481
           + + G+ V N ++GD+VV
Sbjct: 103 VAEKGDEVNNLEIGDRVV 120


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = +2

Query: 308 EVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVVAL 487
           EV ++V    +   D     G +D     P +LG E AG +E +GE V N + GD V+ L
Sbjct: 36  EVRVKVDWSAVCHTDAYTLSG-VDPEGAFPIVLGHEGAGIVESIGEGVINVRPGDHVILL 94


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +2

Query: 308  EVLIRVKACGL-NFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVVA 484
            EV++RVK C + + QD++ +  A+D P  T  I   E   ++  + EN    K+G  +  
Sbjct: 1055 EVVLRVKMCQMGDVQDVLGK--ALDPPSSTNIIRALEKLHQVGALSENEKLTKLGKFLSQ 1112

Query: 485  LP 490
            LP
Sbjct: 1113 LP 1114


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 449 VTNFKVGDQVVALPEYRAWASWCL 520
           ++NF+ GD    +P ++ W ++CL
Sbjct: 348 LSNFREGDSAKNIPTHKLWCTYCL 371


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 215 AQGNARRSTYRLRGLKTVK--ILKKPEPTVGEGEVL 316
           AQGN    T  +RGL+T+K  ILK  +  +   E L
Sbjct: 735 AQGNIATKTPHVRGLRTIKKEILKLVDAYISRAEDL 770


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
 Frame = +2

Query: 458 FKVGDQVVALPEYRAWASWCLYRPSTCTR---CPKECLPWMLL 577
           F  GD++VA+      A W +     CT    CP  C P  L+
Sbjct: 75  FPYGDKMVAVTPDEGNAGWAMSPDQYCTAGTWCPYACEPGYLM 117


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 520 VPAQYVYALPEGMSALDAVAHHHELRGG 603
           +PA+  YA    + +L+   H H++ GG
Sbjct: 616 IPARPFYAQSGSLQSLNTTQHSHQISGG 643


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 325 ESLRPKLPRFD-SSSGRHRLSTEDSFHL 405
           +S R  L  F  SS+ RH++STE  FH+
Sbjct: 216 QSFRGPLEPFKYSSTTRHKVSTESIFHV 243


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 426 KSSKLAKMSPILRWATKWWLS 488
           +SS L K+ P+LR+  ++WL+
Sbjct: 154 RSSHLLKVRPLLRFLIEFWLN 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,108
Number of Sequences: 5004
Number of extensions: 46131
Number of successful extensions: 131
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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