Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0841
(608 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13) 87 1e-17
SB_27978| Best HMM Match : HycH (HMM E-Value=0.12) 54 7e-08
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30) 52 5e-07
SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_43405| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_36205| Best HMM Match : ADH_zinc_N (HMM E-Value=0.00092) 38 0.008
SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.059
SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13) 33 0.24
SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86) 30 1.7
SB_50200| Best HMM Match : RVT_1 (HMM E-Value=0.044) 29 2.9
SB_43329| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_22525| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06) 28 5.1
SB_42667| Best HMM Match : Ribosomal_S9 (HMM E-Value=4.6) 28 6.8
SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_35105| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_59531| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 27 9.0
SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0) 27 9.0
SB_46870| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 27 9.0
SB_26224| Best HMM Match : VWD (HMM E-Value=0) 27 9.0
SB_1139| Best HMM Match : wnt (HMM E-Value=0) 27 9.0
SB_38523| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_22197| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 27 9.0
SB_16302| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 27 9.0
SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_9026| Best HMM Match : Pentapeptide_2 (HMM E-Value=1.4) 27 9.0
>SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)
Length = 562
Score = 86.6 bits (205), Expect = 1e-17
Identities = 37/100 (37%), Positives = 56/100 (56%)
Frame = +2
Query: 254 GLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIE 433
G +K+ K P +G+V+++V ACG+ F DL+ RQG PK P++ GFEC+G +E
Sbjct: 49 GNNKIKVEKYARPKPMQGQVVVKVHACGVTFADLLQRQGHFPLAPKPPYVCGFECSGVVE 108
Query: 434 QVGENVTNFKVGDQVVALPEYRAWASWCLYRPSTCTRCPK 553
++GE VT VG +V+ L Y W + C P+
Sbjct: 109 ELGEEVTGIDVGARVICLAPYGMWTEYACVDAKMCYVMPE 148
>SB_27978| Best HMM Match : HycH (HMM E-Value=0.12)
Length = 316
Score = 54.4 bits (125), Expect = 7e-08
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Frame = +2
Query: 254 GLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIE 433
G +++ I P P + E EVLIRV LN D + R+G+ PP ILG E +G +E
Sbjct: 37 GPESMYIGDAPRPKLKETEVLIRVHFTALNRADTLQRKGSYPPPPGESEILGLEVSGIVE 96
Query: 434 QVGENVT-NFKVGDQVVALPEYRAWASWCLYRPSTCTRCPK 553
++G ++ GD+V+AL +A + + S PK
Sbjct: 97 ELGSACNLGWRKGDKVMALVPGGGYAEFAAVQESHVMPIPK 137
>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
Length = 796
Score = 51.6 bits (118), Expect = 5e-07
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Frame = +2
Query: 311 VLIRVKACGLNFQDLIVRQGAIDSPPKT---PFILGFECAGEIEQVGENVTNFKVGDQVV 481
V+++ ACG+N+ D+ +R G +S K P GFE +G I+ GENVT F++G +V
Sbjct: 40 VVVKTFACGVNYADICIRWGLYESAKKFVGWPITPGFEFSGVIQWKGENVTEFEIGQEVF 99
Query: 482 ALPEYRAWASWCLYRP 529
+ ++ S C+ P
Sbjct: 100 GASLFGSY-SECIRVP 114
>SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 395
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +2
Query: 266 VKILKKPEPTVGE-GEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVG 442
+ ++ +P P V EV+++V G+ +DL + +G + P +LG E +G + VG
Sbjct: 60 LSVITRPVPHVSNPSEVIVKVAYSGICDRDLQILEGEL--PAAKCVVLGHEFSGVVSDVG 117
Query: 443 ENVTNFKVGDQVVALP 490
+V N +GD+VV P
Sbjct: 118 SDVKNVSIGDRVVVNP 133
>SB_43405| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 549
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/60 (36%), Positives = 33/60 (55%)
Frame = +2
Query: 308 EVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVVAL 487
+VLI++ A ++ + +R G+ P+ PF G AG I +G+ VT KVGD V L
Sbjct: 289 QVLIKLSAASVSPVETYIRSGSYARLPELPFTPGNYGAGIIHAIGDEVTKHKVGDHVYTL 348
>SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 348
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +2
Query: 266 VKILKKPEPTV-GEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVG 442
+ ++ +P P V +V++++ ++ DL V +G ID ILG + G ++++G
Sbjct: 12 LSVITRPTPHVQSPRDVVVKIAYSAVSGTDLHVLEGRIDCAKS--IILGHQFVGIVKEIG 69
Query: 443 ENVTNFKVGDQVVALP 490
+V + VGD+VV P
Sbjct: 70 ADVQHVSVGDRVVINP 85
>SB_36205| Best HMM Match : ADH_zinc_N (HMM E-Value=0.00092)
Length = 676
Score = 37.5 bits (83), Expect = 0.008
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Frame = +2
Query: 227 ARRSTYRLRGLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFIL 406
+R ST ++TV K EP G EVL++ + G+N D+ G K PF
Sbjct: 16 SRLSTNFREAVETVSA-KMLEP--GPEEVLVKTRYAGINATDINHTAGRYKPWNKPPFDA 72
Query: 407 GFECAGEIEQVGENVT-NFKVGDQVVALPEYRAWASWCLYRPSTCTRCPKECLPWMLLPI 583
G E GE+ G++ F VG Q V + +A + P+ ++ LPI
Sbjct: 73 GLEGLGEVVATGKDYKGKFSVG-QPVMFMRFGGFAEYVTLTEKDIVPVPRTNPIFLTLPI 131
Query: 584 T 586
+
Sbjct: 132 S 132
>SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 82
Score = 34.7 bits (76), Expect = 0.059
Identities = 21/52 (40%), Positives = 26/52 (50%)
Frame = +2
Query: 308 EVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFK 463
EV I++ A G+ D G +D P ILG E G +E VGE VT K
Sbjct: 30 EVRIKILATGVCHTDAYTLSG-VDPEGLFPCILGHEGGGIVESVGEGVTKVK 80
>SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)
Length = 303
Score = 32.7 bits (71), Expect = 0.24
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 395 PFILGFECAGEIEQVGENVTNFKVGDQVVALP 490
P +LG E +G I VGE V++ K GD+V P
Sbjct: 52 PMVLGHESSGVICAVGEGVSDLKEGDRVAIEP 83
>SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)
Length = 1110
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 304 GRGPDSRESLRPKLPRFDSSSGRHRLSTED 393
GRG D +R +LP DSS R S ED
Sbjct: 1055 GRGRDKGRQMRTRLPSIDSSRSMGRSSDED 1084
>SB_50200| Best HMM Match : RVT_1 (HMM E-Value=0.044)
Length = 527
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 290 PTVGEGEVLIRVKACGLN 343
P V EG V++++KACGL+
Sbjct: 316 PQVDEGSVVVKIKACGLD 333
>SB_43329| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 282
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 390 FGGESMAP*RTIKSWKFRPQAFTRIRTSPSPT 295
FG + +P TIKSW ++PQ TR +P T
Sbjct: 74 FGIDGTSP-PTIKSWCYKPQTVTRSSKTPVKT 104
>SB_22525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 674
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +3
Query: 375 STLHRRLLSSWASNALVKSSKLAKMSPILRWATKWWLSP 491
S L +LL W + K ++ P RW WWL P
Sbjct: 240 SILGGKLLGIWIDLNVPKGVRITPFDP--RWMGAWWLGP 276
>SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
Length = 998
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 363 VRAPSTLHRRLLSSWASNALVKSSKLAKMSPILRWATKWWLSPSTALGP 509
+ +PS L+ S A L+K+ + ++SP+ + K + SP T P
Sbjct: 269 ILSPSPLNSGRSSIRAELTLIKTENMVQLSPLTSPSAKGYASPQTTTRP 317
>SB_42667| Best HMM Match : Ribosomal_S9 (HMM E-Value=4.6)
Length = 179
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 313 DLALTNGRLRFFEYLNGLETPKPVST 236
+LAL RLR+F ++ + P PVS+
Sbjct: 122 ELALRKARLRWFRHVERAQAPNPVSS 147
>SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 789
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 519 RHQLAQARYSGRATTWSPTLKLVTFSPTCSISPA 418
RH++ Q S ATT S T + V + T +ISP+
Sbjct: 368 RHKIGQPVLSVNATTSSSTYETVAVNTTTTISPS 401
>SB_35105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = -3
Query: 561 RHSFGQRVHVLGRYRHQLAQARYSGRATTWSPTL---KLVTFSPTCSISPAHSKPKMKGV 391
R FG RV G + +L ++ S T + +L KLV T S+ H+KP +
Sbjct: 25 RDPFGHRVPEHGPFPFRLIRSPVSSLLITSNDSLIEIKLVGLGSTKSLKTTHAKPLCAAI 84
Query: 390 FGGE 379
+ E
Sbjct: 85 YNPE 88
>SB_59531| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 323
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 483 ATTWSPTLKLVTFSPTCSISPAHSKPKMKGV 391
A TWSPTL +T +P S+S + ++G+
Sbjct: 53 AATWSPTLATLTANPPKSLSKSCGVVNIQGL 83
>SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)
Length = 1075
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 483 ATTWSPTLKLVTFSPTCSISPAHSKPKMKGV 391
A TWSPTL +T +P S+S + ++G+
Sbjct: 166 AATWSPTLATLTANPPKSLSKSCGVVNIQGL 196
>SB_46870| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
Length = 998
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 483 ATTWSPTLKLVTFSPTCSISPAHSKPKMKGV 391
A TWSPTL +T +P S+S + ++G+
Sbjct: 258 AATWSPTLATLTANPPKSLSKSCGVVNIQGL 288
>SB_26224| Best HMM Match : VWD (HMM E-Value=0)
Length = 736
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Frame = +2
Query: 2 SCRPVLSSGLHLQPNATRLDPPA--PY 76
+C L HLQP+ TR PPA PY
Sbjct: 116 TCNQTLPGIYHLQPDPTRYTPPATRPY 142
>SB_1139| Best HMM Match : wnt (HMM E-Value=0)
Length = 500
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Frame = +3
Query: 456 ILRWATKWWLSPSTAL--GPAG---VCTGPVRVRAARRNVC 563
I R A KWW+S + A+ GPAG +C + + +R +C
Sbjct: 155 IKRIAKKWWISQNRAVLFGPAGAKVMCNSITGLISIQRQMC 195
>SB_38523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 483 ATTWSPTLKLVTFSPTCSISPAHSKPKMKGV 391
A TWSPTL +T +P S+S + ++G+
Sbjct: 442 AATWSPTLATLTANPPKSLSKSCGVVNIQGL 472
>SB_22197| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 528
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 483 ATTWSPTLKLVTFSPTCSISPAHSKPKMKGV 391
A TWSPTL +T +P S+S + ++G+
Sbjct: 258 AATWSPTLATLTANPPRSLSKSCGVVNIQGL 288
>SB_16302| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
Length = 870
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 483 ATTWSPTLKLVTFSPTCSISPAHSKPKMKGV 391
A TWSPTL +T +P S+S + ++G+
Sbjct: 258 AATWSPTLATLTANPPRSLSKSCGVVNIQGL 288
>SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 821
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 483 ATTWSPTLKLVTFSPTCSISPAHSKPKMKGV 391
A TWSPTL +T +P S+S + ++G+
Sbjct: 542 AATWSPTLATLTANPPKSLSKSCGVVNIQGL 572
>SB_9026| Best HMM Match : Pentapeptide_2 (HMM E-Value=1.4)
Length = 195
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 577 QQHPGQTFLRAARTRTGPVQTPAGP 503
Q P QT R+ +T GP QT AGP
Sbjct: 151 QAGPQQTPARSQQTPAGPQQTQAGP 175
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,730,680
Number of Sequences: 59808
Number of extensions: 398664
Number of successful extensions: 989
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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