Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0841
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   3.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 328 SLRPKLPRFDSSSGRHRLSTEDSFHLGL 411
           S+RPK P  D+ +G   LSTE    L L
Sbjct: 208 SVRPKFPSMDNING---LSTESKADLPL 232


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 543 AARRNVCPGCCCPSP 587
           +ARRNV    CCP P
Sbjct: 185 SARRNVEYYSCCPEP 199


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 507 PAGVCTGPVRVRAARRNVCPGCCC 578
           P  VC+ P  V  A++ V    CC
Sbjct: 583 PESVCSLPCEVGQAKKYVAGEQCC 606


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = +3

Query: 558 VCPGCCCPSPRTTWW 602
           VC    CP+P   W+
Sbjct: 258 VCVAQACPTPEYRWY 272


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = +3

Query: 558 VCPGCCCPSPRTTWW 602
           VC    CP+P   W+
Sbjct: 258 VCVAQACPTPEYRWY 272


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,401
Number of Sequences: 438
Number of extensions: 3491
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)