Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0840
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    26   4.4  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   4.4  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   7.8  

>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/53 (22%), Positives = 24/53 (45%)
 Frame = +3

Query: 249 FFQPNNTYQIVSHLLSVNNEILQSVLMSPEXXXXXXXLLHNLRKSDSRFYSIE 407
           F Q  NT     H+++ + +   S+ M+P+        L +  + D  FY ++
Sbjct: 495 FEQKKNTPSTFRHIITFDKKTCNSLFMAPKGRFMVAATLGSSTQYDLEFYDLD 547


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 134 TSVNTNITIYHWTFTQEMDKHEMLTFILFIIHSLYSHKVLSTK 262
           T   T+I  Y   + ++ +   ++   LFI+H L   KVL  K
Sbjct: 456 TEFLTSIQFYALRYREDNEHSGLVRICLFIVHYLSCEKVLCEK 498


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 135  HPSIQTLQYITGHSHKKWINMKC 203
            + + QTL YI      KW N+ C
Sbjct: 1159 YATFQTLNYIQNQQPTKWPNLSC 1181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,064
Number of Sequences: 5004
Number of extensions: 44713
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)