Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0840
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0803 + 23318429-23318552,23318688-23319877,23320724-233215...    30   2.0  
09_04_0497 - 18096299-18096496,18096586-18096675,18096809-180969...    28   6.0  
08_02_1073 - 24117834-24118037,24118122-24118211,24118299-241184...    28   8.0  

>12_02_0803 + 23318429-23318552,23318688-23319877,23320724-23321528,
            23321938-23322417,23322535-23322815,23323207-23323302,
            23323423-23323548,23324100-23325890
          Length = 1630

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/59 (30%), Positives = 33/59 (55%)
 Frame = +3

Query: 156  QYITGHSHKKWINMKC*HSFYSLFILYILTKFFQPNNTYQIVSHLLSVNNEILQSVLMS 332
            Q++  H+ +K  + K     +S +I Y L +   P  TY++ S+L+  +  ++QSVL S
Sbjct: 845  QHVEHHAWRKSKHTKHSKPSFSGWIPYGLFQHILPVPTYRVGSNLIRADLNLIQSVLAS 903


>09_04_0497 -
           18096299-18096496,18096586-18096675,18096809-18096914,
           18097005-18097179,18097263-18097365,18097458-18097712,
           18097791-18097868,18097986-18098078,18098179-18098319,
           18098406-18098510,18098658-18098738,18098825-18098866,
           18098966-18099082,18099208-18099351,18099485-18099568,
           18099683-18099803,18099863-18099988,18100106-18100179,
           18100388-18100657
          Length = 800

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 197 EMLTFILFIIHSLYSHKVLSTKQYISN 277
           E+   +  I+HSLYSHK +  ++ +SN
Sbjct: 90  EVSRLLDLIVHSLYSHKEVFLRELVSN 116


>08_02_1073 -
           24117834-24118037,24118122-24118211,24118299-24118404,
           24118477-24118648,24118737-24118839,24118927-24119181,
           24119259-24119336,24119449-24119541,24119660-24119800,
           24119882-24119986,24120135-24120212,24120297-24120341,
           24120463-24120579,24120685-24120828,24120934-24121017,
           24121139-24121232,24121322-24121447,24121585-24121658,
           24121870-24122098,24123124-24123611,24123702-24123749,
           24123841-24124077,24124368-24124404,24125011-24125018
          Length = 1051

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 221 IIHSLYSHKVLSTKQYISN 277
           I+HSLYSHK +  ++ +SN
Sbjct: 357 IVHSLYSHKEVFLRELVSN 375


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,785,865
Number of Sequences: 37544
Number of extensions: 200265
Number of successful extensions: 322
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)