Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0839
(561 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 177 7e-46
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 97 1e-21
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 96 3e-21
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 93 2e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 62 4e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 61 9e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 51 1e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 37 0.002
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 31 0.088
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 27 1.4
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 2.5
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 3.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 5.8
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 7.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 177 bits (432), Expect = 7e-46
Identities = 79/90 (87%), Positives = 83/90 (92%)
Frame = +2
Query: 242 GTEGPYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 421
G + YVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTE 107
Query: 422 APLNPKANREKMTQIMFETFNTPAMYVAIK 511
APLNPK+NREKMTQI+FETFN PA YVAI+
Sbjct: 108 APLNPKSNREKMTQIIFETFNAPAFYVAIQ 137
Score = 77.4 bits (182), Expect = 1e-15
Identities = 35/51 (68%), Positives = 42/51 (82%)
Frame = +3
Query: 102 ERKLAGWVVEQWLPVLCKAGFAGNDAPRAVFPSIVGRPRHQGVMVGMGQKD 254
E ++A V++ +CKAGFAG+DAPRAVFPSIVGRPRH G+MVGMGQKD
Sbjct: 2 EEEIAALVIDNGSG-MCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKD 51
Score = 38.3 bits (85), Expect = 8e-04
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = +1
Query: 508 QAVLSLYASGRTTGIVLD 561
QAVLSLYASGRTTGIVLD
Sbjct: 137 QAVLSLYASGRTTGIVLD 154
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 97.5 bits (232), Expect = 1e-21
Identities = 39/84 (46%), Positives = 63/84 (75%)
Frame = +2
Query: 260 VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 439
VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP
Sbjct: 54 VGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPV 113
Query: 440 ANREKMTQIMFETFNTPAMYVAIK 511
ANREKM + MFE + +YVAI+
Sbjct: 114 ANREKMCETMFERYGFGGVYVAIQ 137
Score = 31.1 bits (67), Expect = 0.12
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +3
Query: 153 KAGFAGNDAPRAVFPSIVGRP 215
K G+A ++ PR FPSIVGRP
Sbjct: 16 KVGYAKDNFPRFQFPSIVGRP 36
Score = 29.1 bits (62), Expect = 0.47
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +1
Query: 508 QAVLSLYASGRTTGIVLD 561
QAVLSLYA G ++G+V+D
Sbjct: 137 QAVLSLYAQGLSSGVVVD 154
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 96.3 bits (229), Expect = 3e-21
Identities = 41/87 (47%), Positives = 61/87 (70%), Gaps = 1/87 (1%)
Frame = +2
Query: 257 YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLN 433
+VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL
Sbjct: 57 FVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLA 116
Query: 434 PKANREKMTQIMFETFNTPAMYVAIKP 514
N+EK+ + +ET N PA+ +++P
Sbjct: 117 NIRNKEKIAEYFYETLNVPALSFSLQP 143
Score = 45.2 bits (102), Expect = 7e-06
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +3
Query: 153 KAGFAGNDAPRAVFPSIVGRPRHQGVMVGMGQKDL 257
KAGFAG+D P+ +FP+ VGR +H+ VM QKD+
Sbjct: 22 KAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDM 56
Score = 31.1 bits (67), Expect = 0.12
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +1
Query: 508 QAVLSLYASGRTTGIVLD 561
Q VL+LYAS RTTGIVL+
Sbjct: 142 QPVLALYASARTTGIVLE 159
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 93.5 bits (222), Expect = 2e-20
Identities = 39/86 (45%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Frame = +2
Query: 257 YVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLN 433
++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE PLN
Sbjct: 75 FIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLN 134
Query: 434 PKANREKMTQIMFETFNTPAMYVAIK 511
P NRE +IMFE+FN +Y+A++
Sbjct: 135 PPENRENTAEIMFESFNCAGLYIAVQ 160
Score = 31.1 bits (67), Expect = 0.12
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 153 KAGFAGNDAPRAVFPSIV 206
K G+AGNDAP VFP+++
Sbjct: 18 KLGYAGNDAPSYVFPTVI 35
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 62.5 bits (145), Expect = 4e-11
Identities = 28/71 (39%), Positives = 40/71 (56%)
Frame = +2
Query: 293 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 472
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 473 ETFNTPAMYVA 505
E+ PA Y+A
Sbjct: 123 ESLRCPATYLA 133
Score = 25.4 bits (53), Expect = 5.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 153 KAGFAGNDAPRAVFPSIVG 209
+ GF+G D P+ V PS G
Sbjct: 24 RIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 61.3 bits (142), Expect = 9e-11
Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Frame = +2
Query: 227 RDGRYGTEGPYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 403
RD + VG++ + G ++ + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 404 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI 508
P+ +TE NP R MT+++FE +N P++ I
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSVAYGI 151
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 50.8 bits (116), Expect = 1e-07
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = +2
Query: 257 YVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 430
YV DE Q I + +K +GI+ +W+ W +L+V P E+ +++TE
Sbjct: 52 YVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSW 111
Query: 431 NPKANREKMTQIMFETFNTPAMYV 502
NP++ R+++ + FE + PA Y+
Sbjct: 112 NPQSVRQQIMEAAFEQLHVPAFYL 135
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 37.1 bits (82), Expect = 0.002
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +2
Query: 308 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 475
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 476 TFNTPAMYVAIKP 514
P +A +P
Sbjct: 172 ECQVPGFTIAYEP 184
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.5 bits (68), Expect = 0.088
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 368 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTP 490
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 27.5 bits (58), Expect = 1.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 99 DERKLAGWVVEQWLPVL 149
D R++ GW+ WLPVL
Sbjct: 476 DYRRILGWMKNNWLPVL 492
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.6 bits (56), Expect = 2.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 168 GNDAPRAVFPSIVGRPRHQGVMVGM 242
GN PRA F ++ P H G+++ M
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM 526
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 3.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 410 LLTEAPLNPKANREKMTQIMFETFN 484
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 5.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 244 PIPTITP*WRGLPTIEGNTARGASFPAKPAL 152
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.0 bits (52), Expect = 7.6
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -3
Query: 178 ASFPAKPALHNTGSHCSTTQPANFLSSHI 92
++F +HNT SH ++T ++F +SH+
Sbjct: 3713 STFSTGSTMHNTVSHATSTS-SSFTTSHL 3740
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,478,300
Number of Sequences: 5004
Number of extensions: 54131
Number of successful extensions: 130
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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