SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0839
         (561 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)             187   6e-48
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)              187   6e-48
SB_56| Best HMM Match : Actin (HMM E-Value=0)                         187   6e-48
SB_56628| Best HMM Match : Actin (HMM E-Value=0)                      187   6e-48
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)              187   6e-48
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)              95   3e-20
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)              81   8e-16
SB_54| Best HMM Match : Actin (HMM E-Value=0)                          81   8e-16
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)             62   4e-10
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)                  61   5e-10
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)               54   1e-07
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)                  47   9e-06
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.017
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)                     36   0.017
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)                 34   0.069
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)                  34   0.069
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_21074| Best HMM Match : NadA (HMM E-Value=2)                        31   0.64 
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)                    31   0.64 
SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)                       31   0.64 
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)                       31   0.64 
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)                      31   0.64 
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.64 
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)                    31   0.85 
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28)                    29   2.6  
SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)              29   2.6  
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2)                   29   2.6  
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)                 29   2.6  
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)                 29   2.6  
SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)              29   2.6  
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)                  29   3.4  
SB_23305| Best HMM Match : RVT_1 (HMM E-Value=0.0013)                  28   4.5  
SB_17130| Best HMM Match : RVT_1 (HMM E-Value=0.0013)                  28   4.5  
SB_36120| Best HMM Match : zf-MIZ (HMM E-Value=3.9)                    28   6.0  
SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   6.0  
SB_15607| Best HMM Match : zf-MIZ (HMM E-Value=3.9)                    28   6.0  
SB_59500| Best HMM Match : RVT_1 (HMM E-Value=0.015)                   28   6.0  
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   6.0  
SB_36009| Best HMM Match : Collagen (HMM E-Value=0)                    27   7.9  
SB_19777| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score =  187 bits (455), Expect = 6e-48
 Identities = 84/90 (93%), Positives = 87/90 (96%)
 Frame = +2

Query: 242 GTEGPYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 421
           G +  YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49  GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108

Query: 422 APLNPKANREKMTQIMFETFNTPAMYVAIK 511
           APLNPKANREKMTQIMFETFN+PAMYVAI+
Sbjct: 109 APLNPKANREKMTQIMFETFNSPAMYVAIQ 138



 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 34/36 (94%), Positives = 36/36 (100%)
 Frame = +3

Query: 147 LCKAGFAGNDAPRAVFPSIVGRPRHQGVMVGMGQKD 254
           +CKAGFAG+DAPRAVFPSIVGRPRHQGVMVGMGQKD
Sbjct: 17  MCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 52



 Score = 37.5 bits (83), Expect = 0.007
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +1

Query: 508 QAVLSLYASGRTTGIVLD 561
           QAVLSLYASGRTTGIV+D
Sbjct: 138 QAVLSLYASGRTTGIVMD 155


>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score =  187 bits (455), Expect = 6e-48
 Identities = 84/90 (93%), Positives = 87/90 (96%)
 Frame = +2

Query: 242 GTEGPYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 421
           G +  YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 48  GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 107

Query: 422 APLNPKANREKMTQIMFETFNTPAMYVAIK 511
           APLNPKANREKMTQIMFETFN+PAMYVAI+
Sbjct: 108 APLNPKANREKMTQIMFETFNSPAMYVAIQ 137



 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 34/36 (94%), Positives = 36/36 (100%)
 Frame = +3

Query: 147 LCKAGFAGNDAPRAVFPSIVGRPRHQGVMVGMGQKD 254
           +CKAGFAG+DAPRAVFPSIVGRPRHQGVMVGMGQKD
Sbjct: 16  MCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 51



 Score = 37.5 bits (83), Expect = 0.007
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +1

Query: 508 QAVLSLYASGRTTGIVLD 561
           QAVLSLYASGRTTGIV+D
Sbjct: 137 QAVLSLYASGRTTGIVMD 154


>SB_56| Best HMM Match : Actin (HMM E-Value=0)
          Length = 375

 Score =  187 bits (455), Expect = 6e-48
 Identities = 84/90 (93%), Positives = 87/90 (96%)
 Frame = +2

Query: 242 GTEGPYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 421
           G +  YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 48  GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 107

Query: 422 APLNPKANREKMTQIMFETFNTPAMYVAIK 511
           APLNPKANREKMTQIMFETFN+PAMYVAI+
Sbjct: 108 APLNPKANREKMTQIMFETFNSPAMYVAIQ 137



 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 34/36 (94%), Positives = 36/36 (100%)
 Frame = +3

Query: 147 LCKAGFAGNDAPRAVFPSIVGRPRHQGVMVGMGQKD 254
           +CKAGFAG+DAPRAVFPSIVGRPRHQGVMVGMGQKD
Sbjct: 16  MCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 51



 Score = 37.5 bits (83), Expect = 0.007
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +1

Query: 508 QAVLSLYASGRTTGIVLD 561
           QAVLSLYASGRTTGIV+D
Sbjct: 137 QAVLSLYASGRTTGIVMD 154


>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
          Length = 376

 Score =  187 bits (455), Expect = 6e-48
 Identities = 84/90 (93%), Positives = 87/90 (96%)
 Frame = +2

Query: 242 GTEGPYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 421
           G +  YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49  GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108

Query: 422 APLNPKANREKMTQIMFETFNTPAMYVAIK 511
           APLNPKANREKMTQIMFETFN+PAMYVAI+
Sbjct: 109 APLNPKANREKMTQIMFETFNSPAMYVAIQ 138



 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 40/54 (74%), Positives = 45/54 (83%)
 Frame = +3

Query: 93  MCDERKLAGWVVEQWLPVLCKAGFAGNDAPRAVFPSIVGRPRHQGVMVGMGQKD 254
           MCD+  +A  VV+     +CKAGFAG+DAPRAVFPSIVGRPRHQGVMVGMGQKD
Sbjct: 1   MCDD-DVAALVVDNGSG-MCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 52



 Score = 37.5 bits (83), Expect = 0.007
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +1

Query: 508 QAVLSLYASGRTTGIVLD 561
           QAVLSLYASGRTTGIV+D
Sbjct: 138 QAVLSLYASGRTTGIVMD 155


>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score =  187 bits (455), Expect = 6e-48
 Identities = 84/90 (93%), Positives = 87/90 (96%)
 Frame = +2

Query: 242 GTEGPYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 421
           G +  YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49  GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108

Query: 422 APLNPKANREKMTQIMFETFNTPAMYVAIK 511
           APLNPKANREKMTQIMFETFN+PAMYVAI+
Sbjct: 109 APLNPKANREKMTQIMFETFNSPAMYVAIQ 138



 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 34/36 (94%), Positives = 36/36 (100%)
 Frame = +3

Query: 147 LCKAGFAGNDAPRAVFPSIVGRPRHQGVMVGMGQKD 254
           +CKAGFAG+DAPRAVFPSIVGRPRHQGVMVGMGQKD
Sbjct: 17  MCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 52



 Score = 37.5 bits (83), Expect = 0.007
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +1

Query: 508 QAVLSLYASGRTTGIVLD 561
           QAVLSLYASGRTTGIV+D
Sbjct: 138 QAVLSLYASGRTTGIVMD 155


>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 95.1 bits (226), Expect = 3e-20
 Identities = 41/85 (48%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
 Frame = +2

Query: 260 VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNP 436
           VGDEA   R +L + YP+++GIV NWDDM+ +W +TF  +++ + P    VLLTE PLNP
Sbjct: 57  VGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNP 116

Query: 437 KANREKMTQIMFETFNTPAMYVAIK 511
             NREKM ++MFE +    +Y+AI+
Sbjct: 117 MKNREKMIEVMFENYQFEGVYIAIQ 141



 Score = 33.1 bits (72), Expect = 0.16
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 153 KAGFAGNDAPRAVFPSIVGRP--RHQGVMVGMGQKDLM 260
           K G+AG++ P  +FPS+VGRP  R    +  +  KDLM
Sbjct: 19  KCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLM 56



 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +1

Query: 508 QAVLSLYASGRTTGIVLD 561
           QAVL+LYA G  TG+V+D
Sbjct: 141 QAVLTLYAQGLLTGVVID 158


>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 80.6 bits (190), Expect = 8e-16
 Identities = 36/43 (83%), Positives = 37/43 (86%)
 Frame = +2

Query: 242 GTEGPYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 370
           G +  YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI   TF
Sbjct: 48  GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90



 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 34/36 (94%), Positives = 36/36 (100%)
 Frame = +3

Query: 147 LCKAGFAGNDAPRAVFPSIVGRPRHQGVMVGMGQKD 254
           +CKAGFAG+DAPRAVFPSIVGRPRHQGVMVGMGQKD
Sbjct: 16  MCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 51



 Score = 37.5 bits (83), Expect = 0.007
 Identities = 16/23 (69%), Positives = 20/23 (86%)
 Frame = +2

Query: 443 NREKMTQIMFETFNTPAMYVAIK 511
           N + M +IMFETFN+PAMYVAI+
Sbjct: 78  NWDDMEKIMFETFNSPAMYVAIQ 100



 Score = 37.5 bits (83), Expect = 0.007
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +1

Query: 508 QAVLSLYASGRTTGIVLD 561
           QAVLSLYASGRTTGIV+D
Sbjct: 100 QAVLSLYASGRTTGIVMD 117


>SB_54| Best HMM Match : Actin (HMM E-Value=0)
          Length = 2486

 Score = 80.6 bits (190), Expect = 8e-16
 Identities = 35/54 (64%), Positives = 44/54 (81%)
 Frame = +2

Query: 350  KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIK 511
            K+W H F ++LRV  E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA++
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQ 2182



 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 16/25 (64%), Positives = 22/25 (88%)
 Frame = +3

Query: 150  CKAGFAGNDAPRAVFPSIVGRPRHQ 224
            CKAG + +++PR VFP+IVGRPRH+
Sbjct: 2106 CKAGLSTDESPRVVFPAIVGRPRHK 2130



 Score = 32.7 bits (71), Expect = 0.21
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +1

Query: 508  QAVLSLYASGRTTGIVLD 561
            QAV++LYASGRTTG V D
Sbjct: 2182 QAVMALYASGRTTGTVFD 2199


>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
          Length = 367

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 23/38 (60%), Positives = 33/38 (86%)
 Frame = +2

Query: 398 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIK 511
           +HPVLLTEAPLNP+ NREK  ++ FETFN PA++++++
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQ 163



 Score = 36.7 bits (81), Expect = 0.013
 Identities = 16/18 (88%), Positives = 18/18 (100%)
 Frame = +1

Query: 508 QAVLSLYASGRTTGIVLD 561
           QAVLSLYA+GRTTG+VLD
Sbjct: 163 QAVLSLYATGRTTGVVLD 180


>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
          Length = 240

 Score = 61.3 bits (142), Expect = 5e-10
 Identities = 24/65 (36%), Positives = 42/65 (64%)
 Frame = +2

Query: 308 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 487
           PI+ G++ +WD  EKI  + +   ++     HP+L++EA  N +  REK+T++MFE +N 
Sbjct: 3   PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62

Query: 488 PAMYV 502
           PA ++
Sbjct: 63  PAFFL 67


>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
          Length = 372

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 24/53 (45%), Positives = 31/53 (58%)
 Frame = +2

Query: 257 YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 415
           ++GDEA  K    T K+PI H IV +WD ME+ W    +  LR  PE+H  LL
Sbjct: 285 FIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336


>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
          Length = 1392

 Score = 47.2 bits (107), Expect = 9e-06
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = +3

Query: 153  KAGFAGNDAPRAVFPSIVGRPRHQ 224
            K GFAG+DAP+ VFP IVGRPRHQ
Sbjct: 1369 KVGFAGDDAPKGVFPPIVGRPRHQ 1392


>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = +2

Query: 224 GRDGRYGTEGPYVGDEAQSKRGIL-TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-- 394
           GR G   + G  VG++  S   I   L+ P +  +VT+++  E++  H F +     P  
Sbjct: 105 GRKGEPDSGGLAVGNDIGSVEMIRWALRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGG 164

Query: 395 EEHPVLLTEAPLNPKANRE 451
             HPV++TE   NP   R+
Sbjct: 165 VNHPVIMTEPVCNPNYCRQ 183


>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
          Length = 152

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +1

Query: 508 QAVLSLYASGRTTGIVLD 561
           QAVLSLYASGRTTG+V D
Sbjct: 16  QAVLSLYASGRTTGVVFD 33



 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +2

Query: 464 IMFETFNTPAMYVAIK 511
           IMFE FN+PA+YVAI+
Sbjct: 1   IMFEAFNSPAVYVAIQ 16


>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
          Length = 921

 Score = 34.3 bits (75), Expect = 0.069
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 147 LCKAGFAGNDAPRAVFPSIVGRPRHQGVMVG 239
           + K GFAG+  PR + P++VG P+   +++G
Sbjct: 711 ISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741


>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
          Length = 580

 Score = 34.3 bits (75), Expect = 0.069
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 257 YVGDEAQSKRGILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 379
           ++GD+ +  +    L Y  P + G + NWD  ++IW +TF  E
Sbjct: 273 FIGDQIEECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315


>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -2

Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
           L C    ++  V+LSH + H  M     D  +HG RS  SCET L
Sbjct: 408 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQL 451


>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
          Length = 358

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -2

Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
           L C    ++  V+LSH + H  M     D  +HG RS  SCET L
Sbjct: 271 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQL 314


>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
          Length = 339

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -2

Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
           L C    ++  V+LSH + H  M     D  +HG RS  SCET L
Sbjct: 249 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQL 292


>SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 885

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = -2

Query: 269 HLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAQY 144
           H++ K ++SH +HH ++      + +HG R + SCE+ L ++
Sbjct: 470 HIITKNIVSHLEHHDILY-----KFQHGFRKLRSCESQLIEF 506


>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -2

Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
           L C    ++  V+LSH + H  M     D  +HG RS  SCET L
Sbjct: 91  LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQL 134


>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 402

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -2

Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
           L C    ++  V+LSH + H  M     D  +HG RS  SCET L
Sbjct: 91  LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQL 134


>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
          Length = 272

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -2

Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
           L C    ++  V+LSH + H  M     D  +HG RS  SCET L
Sbjct: 213 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQL 256


>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -2

Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
           L C    ++  V+LSH + H  M     D  +HG RS  SCET L
Sbjct: 125 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQL 168


>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
          Length = 570

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
           L C    ++  ++LSH + H  M     D  +HG RS  SCET L
Sbjct: 173 LTCICCKVMEHIVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQL 216


>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = -2

Query: 221 MAGPSHDRGEHGARSIISCETGLA 150
           MA  + D GE+G+ SI+S ETGLA
Sbjct: 1   MARSADDGGENGSGSIVSGETGLA 24


>SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28)
          Length = 419

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
           L C    ++  ++LSH + H L A       +HG R  +SCET L
Sbjct: 242 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQL 285


>SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
          Length = 330

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
           L C    ++  ++LSH + H L A       +HG R  +SCET L
Sbjct: 103 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQL 146


>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2396

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 287  LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
            L C    ++  ++LSH + H L A       +HG R  +SCET L
Sbjct: 1641 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQL 1684


>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 859

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
           L C    ++  ++LSH + H L A       +HG R  +SCET L
Sbjct: 669 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQL 712


>SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2)
          Length = 329

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
           L C    ++  ++LSH + H L A       +HG R  +SCET L
Sbjct: 224 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQL 267


>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
          Length = 1492

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 287  LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
            L C    ++  ++LSH + H L A       +HG R  +SCET L
Sbjct: 1079 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQL 1122


>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
          Length = 452

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
           L C    ++  ++LSH + H L A       +HG R  +SCET L
Sbjct: 22  LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQL 65


>SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
          Length = 330

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
           L C    ++  ++LSH + H L A       +HG R  +SCET L
Sbjct: 103 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQL 146


>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
          Length = 635

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +2

Query: 182 SRRVPLDRGKAPPSGRDGRYGTEGPYVGDEAQSKRGILTLKYPIEHGIVTNW--DDMEKI 355
           SR V L +     +GR+   G  G  V    + K  ++TL + I  G+  +   D  EK+
Sbjct: 438 SRPVTLSQNVVSVTGRE-ESGGSGTQV---CRKKAPLITLSHVIRMGLALSLVSDVKEKV 493

Query: 356 WHHTFYN 376
           W+HT  N
Sbjct: 494 WYHTCPN 500


>SB_23305| Best HMM Match : RVT_1 (HMM E-Value=0.0013)
          Length = 808

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -1

Query: 540 TTGRVQREHGLMATYMAGVLNVSNMIWVIFSLLALGLRGASVSRTGCSSGATR 382
           T G VQR  GL+  +   + N S     +F L+  G R  S S  G  S AT+
Sbjct: 275 TVGEVQRLLGLLGYHRQYIANFSKTAKCLFQLIQ-GPRDKSSSSKGGPSSATK 326


>SB_17130| Best HMM Match : RVT_1 (HMM E-Value=0.0013)
          Length = 994

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -1

Query: 540 TTGRVQREHGLMATYMAGVLNVSNMIWVIFSLLALGLRGASVSRTGCSSGATR 382
           T G VQR  GL+  +   + N S     +F L+  G R  S S  G  S AT+
Sbjct: 832 TVGEVQRLLGLLGYHRQYIANFSKTAKCLFQLIQ-GPRDKSSSSKGGPSSATK 883


>SB_36120| Best HMM Match : zf-MIZ (HMM E-Value=3.9)
          Length = 209

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
           L C    ++  V+LSH + H L A       +HG R+  SCET L
Sbjct: 93  LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQL 136


>SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 522

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
           L C    ++  V+LSH + H L A       +HG R+  SCET L
Sbjct: 93  LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQL 136


>SB_15607| Best HMM Match : zf-MIZ (HMM E-Value=3.9)
          Length = 221

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
           L C    ++  V+LSH + H L A       +HG R+  SCET L
Sbjct: 126 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQL 169


>SB_59500| Best HMM Match : RVT_1 (HMM E-Value=0.015)
          Length = 224

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
           L C    ++  V+LSH + H L A       +HG R+  SCET L
Sbjct: 43  LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQL 86


>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1676

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
           L C    ++  V+LSH + H L A       +HG R+  SCET L
Sbjct: 715 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQL 758


>SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1176

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
           L C    ++  V+LSH + H L A       +HG R+  SCET L
Sbjct: 799 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQL 842


>SB_36009| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 687

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 206 GKAPPSGRDGRYGTEGP 256
           G+A PSGR+G  GT GP
Sbjct: 163 GEAGPSGRNGANGTAGP 179


>SB_19777| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 182 SRRVPLDRGKAPPSGRDGRYGTEGPYVGDEAQSKRG 289
           SR  P DRG   P G  G  G +G    D  + +RG
Sbjct: 6   SRGTPGDRGPRGPPGEQGFSGVKGKEGRDGVKGERG 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,972,969
Number of Sequences: 59808
Number of extensions: 484048
Number of successful extensions: 1462
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1456
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -