Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0839
(561 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 187 6e-48
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 187 6e-48
SB_56| Best HMM Match : Actin (HMM E-Value=0) 187 6e-48
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 187 6e-48
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 187 6e-48
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 95 3e-20
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 81 8e-16
SB_54| Best HMM Match : Actin (HMM E-Value=0) 81 8e-16
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 62 4e-10
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 61 5e-10
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 54 1e-07
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 47 9e-06
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.017
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 36 0.017
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 34 0.069
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 34 0.069
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 31 0.64
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 31 0.64
SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0) 31 0.64
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 31 0.64
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 31 0.64
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 31 0.85
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28) 29 2.6
SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 29 2.6
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2) 29 2.6
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 29 2.6
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 29 2.6
SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 29 2.6
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 29 3.4
SB_23305| Best HMM Match : RVT_1 (HMM E-Value=0.0013) 28 4.5
SB_17130| Best HMM Match : RVT_1 (HMM E-Value=0.0013) 28 4.5
SB_36120| Best HMM Match : zf-MIZ (HMM E-Value=3.9) 28 6.0
SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0) 28 6.0
SB_15607| Best HMM Match : zf-MIZ (HMM E-Value=3.9) 28 6.0
SB_59500| Best HMM Match : RVT_1 (HMM E-Value=0.015) 28 6.0
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0) 28 6.0
SB_36009| Best HMM Match : Collagen (HMM E-Value=0) 27 7.9
SB_19777| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 187 bits (455), Expect = 6e-48
Identities = 84/90 (93%), Positives = 87/90 (96%)
Frame = +2
Query: 242 GTEGPYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 421
G + YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 422 APLNPKANREKMTQIMFETFNTPAMYVAIK 511
APLNPKANREKMTQIMFETFN+PAMYVAI+
Sbjct: 109 APLNPKANREKMTQIMFETFNSPAMYVAIQ 138
Score = 79.0 bits (186), Expect = 2e-15
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +3
Query: 147 LCKAGFAGNDAPRAVFPSIVGRPRHQGVMVGMGQKD 254
+CKAGFAG+DAPRAVFPSIVGRPRHQGVMVGMGQKD
Sbjct: 17 MCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 52
Score = 37.5 bits (83), Expect = 0.007
Identities = 17/18 (94%), Positives = 18/18 (100%)
Frame = +1
Query: 508 QAVLSLYASGRTTGIVLD 561
QAVLSLYASGRTTGIV+D
Sbjct: 138 QAVLSLYASGRTTGIVMD 155
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 187 bits (455), Expect = 6e-48
Identities = 84/90 (93%), Positives = 87/90 (96%)
Frame = +2
Query: 242 GTEGPYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 421
G + YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 107
Query: 422 APLNPKANREKMTQIMFETFNTPAMYVAIK 511
APLNPKANREKMTQIMFETFN+PAMYVAI+
Sbjct: 108 APLNPKANREKMTQIMFETFNSPAMYVAIQ 137
Score = 79.0 bits (186), Expect = 2e-15
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +3
Query: 147 LCKAGFAGNDAPRAVFPSIVGRPRHQGVMVGMGQKD 254
+CKAGFAG+DAPRAVFPSIVGRPRHQGVMVGMGQKD
Sbjct: 16 MCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 51
Score = 37.5 bits (83), Expect = 0.007
Identities = 17/18 (94%), Positives = 18/18 (100%)
Frame = +1
Query: 508 QAVLSLYASGRTTGIVLD 561
QAVLSLYASGRTTGIV+D
Sbjct: 137 QAVLSLYASGRTTGIVMD 154
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 187 bits (455), Expect = 6e-48
Identities = 84/90 (93%), Positives = 87/90 (96%)
Frame = +2
Query: 242 GTEGPYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 421
G + YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 107
Query: 422 APLNPKANREKMTQIMFETFNTPAMYVAIK 511
APLNPKANREKMTQIMFETFN+PAMYVAI+
Sbjct: 108 APLNPKANREKMTQIMFETFNSPAMYVAIQ 137
Score = 79.0 bits (186), Expect = 2e-15
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +3
Query: 147 LCKAGFAGNDAPRAVFPSIVGRPRHQGVMVGMGQKD 254
+CKAGFAG+DAPRAVFPSIVGRPRHQGVMVGMGQKD
Sbjct: 16 MCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 51
Score = 37.5 bits (83), Expect = 0.007
Identities = 17/18 (94%), Positives = 18/18 (100%)
Frame = +1
Query: 508 QAVLSLYASGRTTGIVLD 561
QAVLSLYASGRTTGIV+D
Sbjct: 137 QAVLSLYASGRTTGIVMD 154
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 187 bits (455), Expect = 6e-48
Identities = 84/90 (93%), Positives = 87/90 (96%)
Frame = +2
Query: 242 GTEGPYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 421
G + YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 422 APLNPKANREKMTQIMFETFNTPAMYVAIK 511
APLNPKANREKMTQIMFETFN+PAMYVAI+
Sbjct: 109 APLNPKANREKMTQIMFETFNSPAMYVAIQ 138
Score = 81.4 bits (192), Expect = 5e-16
Identities = 40/54 (74%), Positives = 45/54 (83%)
Frame = +3
Query: 93 MCDERKLAGWVVEQWLPVLCKAGFAGNDAPRAVFPSIVGRPRHQGVMVGMGQKD 254
MCD+ +A VV+ +CKAGFAG+DAPRAVFPSIVGRPRHQGVMVGMGQKD
Sbjct: 1 MCDD-DVAALVVDNGSG-MCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 52
Score = 37.5 bits (83), Expect = 0.007
Identities = 17/18 (94%), Positives = 18/18 (100%)
Frame = +1
Query: 508 QAVLSLYASGRTTGIVLD 561
QAVLSLYASGRTTGIV+D
Sbjct: 138 QAVLSLYASGRTTGIVMD 155
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 187 bits (455), Expect = 6e-48
Identities = 84/90 (93%), Positives = 87/90 (96%)
Frame = +2
Query: 242 GTEGPYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 421
G + YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 422 APLNPKANREKMTQIMFETFNTPAMYVAIK 511
APLNPKANREKMTQIMFETFN+PAMYVAI+
Sbjct: 109 APLNPKANREKMTQIMFETFNSPAMYVAIQ 138
Score = 79.0 bits (186), Expect = 2e-15
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +3
Query: 147 LCKAGFAGNDAPRAVFPSIVGRPRHQGVMVGMGQKD 254
+CKAGFAG+DAPRAVFPSIVGRPRHQGVMVGMGQKD
Sbjct: 17 MCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 52
Score = 37.5 bits (83), Expect = 0.007
Identities = 17/18 (94%), Positives = 18/18 (100%)
Frame = +1
Query: 508 QAVLSLYASGRTTGIVLD 561
QAVLSLYASGRTTGIV+D
Sbjct: 138 QAVLSLYASGRTTGIVMD 155
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 95.1 bits (226), Expect = 3e-20
Identities = 41/85 (48%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Frame = +2
Query: 260 VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNP 436
VGDEA R +L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE PLNP
Sbjct: 57 VGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNP 116
Query: 437 KANREKMTQIMFETFNTPAMYVAIK 511
NREKM ++MFE + +Y+AI+
Sbjct: 117 MKNREKMIEVMFENYQFEGVYIAIQ 141
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +3
Query: 153 KAGFAGNDAPRAVFPSIVGRP--RHQGVMVGMGQKDLM 260
K G+AG++ P +FPS+VGRP R + + KDLM
Sbjct: 19 KCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLM 56
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 508 QAVLSLYASGRTTGIVLD 561
QAVL+LYA G TG+V+D
Sbjct: 141 QAVLTLYAQGLLTGVVID 158
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 80.6 bits (190), Expect = 8e-16
Identities = 36/43 (83%), Positives = 37/43 (86%)
Frame = +2
Query: 242 GTEGPYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 370
G + YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 79.0 bits (186), Expect = 2e-15
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +3
Query: 147 LCKAGFAGNDAPRAVFPSIVGRPRHQGVMVGMGQKD 254
+CKAGFAG+DAPRAVFPSIVGRPRHQGVMVGMGQKD
Sbjct: 16 MCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 51
Score = 37.5 bits (83), Expect = 0.007
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +2
Query: 443 NREKMTQIMFETFNTPAMYVAIK 511
N + M +IMFETFN+PAMYVAI+
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQ 100
Score = 37.5 bits (83), Expect = 0.007
Identities = 17/18 (94%), Positives = 18/18 (100%)
Frame = +1
Query: 508 QAVLSLYASGRTTGIVLD 561
QAVLSLYASGRTTGIV+D
Sbjct: 100 QAVLSLYASGRTTGIVMD 117
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 80.6 bits (190), Expect = 8e-16
Identities = 35/54 (64%), Positives = 44/54 (81%)
Frame = +2
Query: 350 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIK 511
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA++
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQ 2182
Score = 43.2 bits (97), Expect = 1e-04
Identities = 16/25 (64%), Positives = 22/25 (88%)
Frame = +3
Query: 150 CKAGFAGNDAPRAVFPSIVGRPRHQ 224
CKAG + +++PR VFP+IVGRPRH+
Sbjct: 2106 CKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 32.7 bits (71), Expect = 0.21
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +1
Query: 508 QAVLSLYASGRTTGIVLD 561
QAV++LYASGRTTG V D
Sbjct: 2182 QAVMALYASGRTTGTVFD 2199
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 61.7 bits (143), Expect = 4e-10
Identities = 23/38 (60%), Positives = 33/38 (86%)
Frame = +2
Query: 398 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIK 511
+HPVLLTEAPLNP+ NREK ++ FETFN PA++++++
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQ 163
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +1
Query: 508 QAVLSLYASGRTTGIVLD 561
QAVLSLYA+GRTTG+VLD
Sbjct: 163 QAVLSLYATGRTTGVVLD 180
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 61.3 bits (142), Expect = 5e-10
Identities = 24/65 (36%), Positives = 42/65 (64%)
Frame = +2
Query: 308 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 487
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 488 PAMYV 502
PA ++
Sbjct: 63 PAFFL 67
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/53 (45%), Positives = 31/53 (58%)
Frame = +2
Query: 257 YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 415
++GDEA K T K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 285 FIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 47.2 bits (107), Expect = 9e-06
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = +3
Query: 153 KAGFAGNDAPRAVFPSIVGRPRHQ 224
K GFAG+DAP+ VFP IVGRPRHQ
Sbjct: 1369 KVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 36.3 bits (80), Expect = 0.017
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = +2
Query: 224 GRDGRYGTEGPYVGDEAQSKRGIL-TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-- 394
GR G + G VG++ S I L+ P + +VT+++ E++ H F + P
Sbjct: 105 GRKGEPDSGGLAVGNDIGSVEMIRWALRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGG 164
Query: 395 EEHPVLLTEAPLNPKANRE 451
HPV++TE NP R+
Sbjct: 165 VNHPVIMTEPVCNPNYCRQ 183
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 36.3 bits (80), Expect = 0.017
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +1
Query: 508 QAVLSLYASGRTTGIVLD 561
QAVLSLYASGRTTG+V D
Sbjct: 16 QAVLSLYASGRTTGVVFD 33
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +2
Query: 464 IMFETFNTPAMYVAIK 511
IMFE FN+PA+YVAI+
Sbjct: 1 IMFEAFNSPAVYVAIQ 16
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 34.3 bits (75), Expect = 0.069
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 147 LCKAGFAGNDAPRAVFPSIVGRPRHQGVMVG 239
+ K GFAG+ PR + P++VG P+ +++G
Sbjct: 711 ISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 34.3 bits (75), Expect = 0.069
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 257 YVGDEAQSKRGILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 379
++GD+ + + L Y P + G + NWD ++IW +TF E
Sbjct: 273 FIGDQIEECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 31.1 bits (67), Expect = 0.64
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -2
Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C ++ V+LSH + H M D +HG RS SCET L
Sbjct: 408 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQL 451
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 31.1 bits (67), Expect = 0.64
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -2
Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C ++ V+LSH + H M D +HG RS SCET L
Sbjct: 271 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQL 314
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 31.1 bits (67), Expect = 0.64
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -2
Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C ++ V+LSH + H M D +HG RS SCET L
Sbjct: 249 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQL 292
>SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 885
Score = 31.1 bits (67), Expect = 0.64
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = -2
Query: 269 HLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAQY 144
H++ K ++SH +HH ++ + +HG R + SCE+ L ++
Sbjct: 470 HIITKNIVSHLEHHDILY-----KFQHGFRKLRSCESQLIEF 506
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 31.1 bits (67), Expect = 0.64
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -2
Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C ++ V+LSH + H M D +HG RS SCET L
Sbjct: 91 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQL 134
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 31.1 bits (67), Expect = 0.64
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -2
Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C ++ V+LSH + H M D +HG RS SCET L
Sbjct: 91 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQL 134
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 31.1 bits (67), Expect = 0.64
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -2
Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C ++ V+LSH + H M D +HG RS SCET L
Sbjct: 213 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQL 256
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 31.1 bits (67), Expect = 0.64
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -2
Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C ++ V+LSH + H M D +HG RS SCET L
Sbjct: 125 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQL 168
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 30.7 bits (66), Expect = 0.85
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -2
Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C ++ ++LSH + H M D +HG RS SCET L
Sbjct: 173 LTCICCKVMEHIVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQL 216
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -2
Query: 221 MAGPSHDRGEHGARSIISCETGLA 150
MA + D GE+G+ SI+S ETGLA
Sbjct: 1 MARSADDGGENGSGSIVSGETGLA 24
>SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28)
Length = 419
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C ++ ++LSH + H L A +HG R +SCET L
Sbjct: 242 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQL 285
>SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C ++ ++LSH + H L A +HG R +SCET L
Sbjct: 103 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQL 146
>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2396
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C ++ ++LSH + H L A +HG R +SCET L
Sbjct: 1641 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQL 1684
>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C ++ ++LSH + H L A +HG R +SCET L
Sbjct: 669 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQL 712
>SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2)
Length = 329
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C ++ ++LSH + H L A +HG R +SCET L
Sbjct: 224 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQL 267
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C ++ ++LSH + H L A +HG R +SCET L
Sbjct: 1079 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQL 1122
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C ++ ++LSH + H L A +HG R +SCET L
Sbjct: 22 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQL 65
>SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C ++ ++LSH + H L A +HG R +SCET L
Sbjct: 103 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQL 146
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +2
Query: 182 SRRVPLDRGKAPPSGRDGRYGTEGPYVGDEAQSKRGILTLKYPIEHGIVTNW--DDMEKI 355
SR V L + +GR+ G G V + K ++TL + I G+ + D EK+
Sbjct: 438 SRPVTLSQNVVSVTGRE-ESGGSGTQV---CRKKAPLITLSHVIRMGLALSLVSDVKEKV 493
Query: 356 WHHTFYN 376
W+HT N
Sbjct: 494 WYHTCPN 500
>SB_23305| Best HMM Match : RVT_1 (HMM E-Value=0.0013)
Length = 808
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = -1
Query: 540 TTGRVQREHGLMATYMAGVLNVSNMIWVIFSLLALGLRGASVSRTGCSSGATR 382
T G VQR GL+ + + N S +F L+ G R S S G S AT+
Sbjct: 275 TVGEVQRLLGLLGYHRQYIANFSKTAKCLFQLIQ-GPRDKSSSSKGGPSSATK 326
>SB_17130| Best HMM Match : RVT_1 (HMM E-Value=0.0013)
Length = 994
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = -1
Query: 540 TTGRVQREHGLMATYMAGVLNVSNMIWVIFSLLALGLRGASVSRTGCSSGATR 382
T G VQR GL+ + + N S +F L+ G R S S G S AT+
Sbjct: 832 TVGEVQRLLGLLGYHRQYIANFSKTAKCLFQLIQ-GPRDKSSSSKGGPSSATK 883
>SB_36120| Best HMM Match : zf-MIZ (HMM E-Value=3.9)
Length = 209
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -2
Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C ++ V+LSH + H L A +HG R+ SCET L
Sbjct: 93 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQL 136
>SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 522
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -2
Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C ++ V+LSH + H L A +HG R+ SCET L
Sbjct: 93 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQL 136
>SB_15607| Best HMM Match : zf-MIZ (HMM E-Value=3.9)
Length = 221
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -2
Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C ++ V+LSH + H L A +HG R+ SCET L
Sbjct: 126 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQL 169
>SB_59500| Best HMM Match : RVT_1 (HMM E-Value=0.015)
Length = 224
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -2
Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C ++ V+LSH + H L A +HG R+ SCET L
Sbjct: 43 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQL 86
>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1676
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -2
Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C ++ V+LSH + H L A +HG R+ SCET L
Sbjct: 715 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQL 758
>SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1176
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -2
Query: 287 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C ++ V+LSH + H L A +HG R+ SCET L
Sbjct: 799 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQL 842
>SB_36009| Best HMM Match : Collagen (HMM E-Value=0)
Length = 687
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 206 GKAPPSGRDGRYGTEGP 256
G+A PSGR+G GT GP
Sbjct: 163 GEAGPSGRNGANGTAGP 179
>SB_19777| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 182 SRRVPLDRGKAPPSGRDGRYGTEGPYVGDEAQSKRG 289
SR P DRG P G G G +G D + +RG
Sbjct: 6 SRGTPGDRGPRGPPGEQGFSGVKGKEGRDGVKGERG 41
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,972,969
Number of Sequences: 59808
Number of extensions: 484048
Number of successful extensions: 1462
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1456
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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