Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0839
         (561 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     25   0.40 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   0.91 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             24   0.91 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.1  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = -2

Query: 299 GSGYLFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAQYRKPLF 129
           GS Y+   VP    +VLL+ TD   +    S D  E+G   II   T +  + KP+F
Sbjct: 329 GSNYMQTRVPAWCDRVLLNPTDKMLVQDISSPDAVEYG---IIGPTTCMGDH-KPVF 381


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 203 DRGEHGARSIISCETGLAQYRKPL 132
           D GEH   ++   E GLA    PL
Sbjct: 130 DPGEHNGDTVTDVEAGLASRTNPL 153


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 203 DRGEHGARSIISCETGLAQYRKPL 132
           D GEH   ++   E GLA    PL
Sbjct: 125 DPGEHNGDTVTDVEAGLASRTNPL 148


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 479 FNTPAMYVAIKPC 517
           FNT  ++V +KPC
Sbjct: 223 FNTTTIFVPVKPC 235


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 380  LRVAPEEHPVLLTEAPLNPKANREKM 457
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,635
Number of Sequences: 438
Number of extensions: 4246
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)