Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0838
         (395 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   1.1  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   1.1  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   1.1  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   2.5  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    22   2.5  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   3.4  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   3.4  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    20   7.7  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 205 RGNDKLNDPYTQNSHTNLNGDCN 137
           RGN+  N P   N++TN N + N
Sbjct: 125 RGNNN-NTPSATNNNTNFNNNSN 146


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 205 RGNDKLNDPYTQNSHTNLNGDCN 137
           RGN+  N P   N++TN N + N
Sbjct: 73  RGNNN-NTPSATNNNTNFNNNSN 94


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 205 RGNDKLNDPYTQNSHTNLNGDCN 137
           RGN+  N P   N++TN N + N
Sbjct: 256 RGNNN-NTPSATNNNTNFNNNSN 277


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 300 EWLRRTQRPSRTGPDP 347
           EW+++T   S+  P+P
Sbjct: 125 EWIKKTSYQSQPNPEP 140


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 300 EWLRRTQRPSRTGPDP 347
           EW+++T   S+  P+P
Sbjct: 125 EWIKKTSYQSQPNPEP 140


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = -1

Query: 359 PRWTGVRSRSG-WSLSPSQPFRQLESIDLSSKTWVSIR*HESFRSHARSSR 210
           P   GV    G   LS S+P ++ ES  +    WV    +    S  RS R
Sbjct: 160 PEVGGVEEAKGPVDLSKSEPEKKTESQPMLWPAWVYCTRYSDRPSSGRSPR 210


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 389 PDVASSAGFPPRW 351
           P ++ S GF P+W
Sbjct: 202 PSISPSGGFLPKW 214


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 222 CMTPEGLVLPDTN 260
           C++PEG +LP  +
Sbjct: 17  CVSPEGSLLPSNS 29


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,579
Number of Sequences: 336
Number of extensions: 2262
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8435920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)