BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0838 (395 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 25 4.3 SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 5.6 SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 24 9.8 >SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|Schizosaccharomyces pombe|chr 3|||Manual Length = 551 Score = 25.0 bits (52), Expect = 4.3 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%) Frame = +3 Query: 237 GLVLPDTNPG--LA*QINRLELSEWLRRTQRPSRTGPDPCP-PRRKTSA*SNVRPT 395 G V + N G + + +++ SE + +TGP P P P+ K+SA S T Sbjct: 335 GAVFAEINKGEGITSGLRKVDKSEMTHKNPNLRKTGPTPGPKPKIKSSAPSKPAET 390 >SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 743 Score = 24.6 bits (51), Expect = 5.6 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = -2 Query: 187 NDPYTQNSHTNLNGDCN 137 N PY+QN N NG+ N Sbjct: 427 NSPYSQNMLYNFNGNAN 443 >SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr 3|||Manual Length = 1516 Score = 23.8 bits (49), Expect = 9.8 Identities = 13/35 (37%), Positives = 16/35 (45%) Frame = -1 Query: 377 SSAGFPPRWTGVRSRSGWSLSPSQPFRQLESIDLS 273 S AGFP RWT S + + R ES+ S Sbjct: 697 SCAGFPSRWTFDEFVSRYYMLVPSAVRTTESLTFS 731 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,692,916 Number of Sequences: 5004 Number of extensions: 34997 Number of successful extensions: 73 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 73 length of database: 2,362,478 effective HSP length: 66 effective length of database: 2,032,214 effective search space used: 132093910 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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