Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0838
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   4.3  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   5.6  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    24   9.8  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +3

Query: 237 GLVLPDTNPG--LA*QINRLELSEWLRRTQRPSRTGPDPCP-PRRKTSA*SNVRPT 395
           G V  + N G  +   + +++ SE   +     +TGP P P P+ K+SA S    T
Sbjct: 335 GAVFAEINKGEGITSGLRKVDKSEMTHKNPNLRKTGPTPGPKPKIKSSAPSKPAET 390


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 187 NDPYTQNSHTNLNGDCN 137
           N PY+QN   N NG+ N
Sbjct: 427 NSPYSQNMLYNFNGNAN 443


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 377 SSAGFPPRWTGVRSRSGWSLSPSQPFRQLESIDLS 273
           S AGFP RWT     S + +      R  ES+  S
Sbjct: 697 SCAGFPSRWTFDEFVSRYYMLVPSAVRTTESLTFS 731


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,692,916
Number of Sequences: 5004
Number of extensions: 34997
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)