Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0838
(395 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0215 + 13524418-13524465,13524856-13525171,13525291-135253... 31 0.34
07_03_1055 - 23612968-23613038,23614625-23614763,23614854-236150... 30 0.59
08_02_0417 - 16904476-16904662,16904846-16905029,16905150-169058... 29 1.0
09_03_0003 + 11396076-11396386,11398803-11398869,11399194-113996... 29 1.8
01_05_0416 + 21956050-21956512,21958001-21958065,21958772-219589... 29 1.8
02_05_0710 - 31115116-31115214,31115747-31115851,31116210-311162... 28 3.1
07_03_1566 + 27766336-27766393,27766480-27766609,27766728-277667... 27 5.5
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247 27 5.5
06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338 27 7.2
05_04_0369 - 20691100-20691235,20691318-20691488,20691540-206919... 27 7.2
04_03_0365 - 14950398-14950880,14950967-14951262,14951277-149514... 27 7.2
04_03_0103 + 11288977-11290353,11291962-11292075,11294987-112954... 27 7.2
03_01_0150 + 1191410-1191697,1191818-1191941,1192063-1192121,119... 27 7.2
02_02_0655 - 12679230-12679676 27 7.2
01_06_0181 - 27262425-27263337,27263452-27263633 27 7.2
12_02_0306 + 17307166-17309091 26 9.6
09_04_0667 - 19323771-19323858,19324022-19324076,19324582-19325185 26 9.6
07_01_1167 + 11030200-11031165,11031273-11031407,11031509-11031874 26 9.6
>09_03_0215 +
13524418-13524465,13524856-13525171,13525291-13525352,
13526352-13527063,13527847-13527863
Length = 384
Score = 31.1 bits (67), Expect = 0.34
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -2
Query: 352 GQGSGPVRDGL*VRLSHSDSSSLLICQARPGLVSGSTSPSGVMHGPADG 206
G G+G V DGL +D L++ Q G+ G +P+G G ADG
Sbjct: 238 GLGAGGVEDGLVEEGPGADELVLVVLQHVVGVGRGGGAPAGRDEGAADG 286
>07_03_1055 -
23612968-23613038,23614625-23614763,23614854-23615021,
23615341-23616045,23616647-23616847
Length = 427
Score = 30.3 bits (65), Expect = 0.59
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -1
Query: 389 PDVASSAGFPPRWTGVR-SRSGWSLSPSQPFRQLESIDLSSKTWVSIR*HESFRSHARSS 213
PD S + F RW GVR R+ L P Q +Q ID ++++S+ +F+ H+R +
Sbjct: 87 PDWCSGSNFKHRWGGVRFKRTMLQLEPDQ--KQF-IIDNDFESFLSL---SNFKVHSRLA 140
Query: 212 RW 207
W
Sbjct: 141 EW 142
>08_02_0417 -
16904476-16904662,16904846-16905029,16905150-16905897,
16906003-16906227,16906318-16906485,16906803-16907453
Length = 720
Score = 29.5 bits (63), Expect = 1.0
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -1
Query: 389 PDVASSAGFPPRWTGVR-SRSGWSLSPSQPFRQLESIDLSSKTWVSIR*HESFRSHARSS 213
PD S + F RW GVR R+ L P Q + ID ++++S+ +F+ H+R +
Sbjct: 2 PDWCSGSNFKHRWGGVRFKRTMLELKPDQ---KKFIIDNGFESFLSL---SNFKVHSRLA 55
Query: 212 RW 207
W
Sbjct: 56 EW 57
>09_03_0003 +
11396076-11396386,11398803-11398869,11399194-11399698,
11400903-11401038,11401186-11401257,11401891-11401923,
11401924-11402047,11402387-11402437,11403437-11403563,
11404230-11404298,11404369-11404486,11404755-11405151
Length = 669
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 226 MHGPADGRGNDKLNDPYTQNSHTNLN 149
MHG DG+GND ++ P + H L+
Sbjct: 1 MHGNYDGKGNDLVSSPLVFDVHMGLH 26
>01_05_0416 +
21956050-21956512,21958001-21958065,21958772-21958933,
21959006-21959107
Length = 263
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = +3
Query: 309 RRTQRPSRTGPDPCPPRRKTSA*SNVRPT 395
RRT PSRT P PP+ T A S RPT
Sbjct: 48 RRTGPPSRTNTSPQPPKDST-ARSGRRPT 75
>02_05_0710 -
31115116-31115214,31115747-31115851,31116210-31116260,
31116393-31116494,31116651-31116883,31117306-31117497,
31118142-31118322,31118424-31118623,31119105-31119645
Length = 567
Score = 27.9 bits (59), Expect = 3.1
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Frame = -1
Query: 389 PDVASSAGFPPRWTGVRSR-------SGWSLSPSQPFRQLESIDLSSKTWVSIR*HESFR 231
PD+ + G P GVR R L PS + ID+++ V R E
Sbjct: 322 PDLRKAMGMKPDQKGVRVRRVEPTAPESGCLQPSDIILSFDGIDIANDGTVPFRHGERIG 381
Query: 230 -SHARSSRWPGERQIK*SLHPKFTHKFERRL 141
S+ S ++ GE+ + L H+F+ +L
Sbjct: 382 FSYLVSQKYTGEKALVKVLRNSKVHEFKIKL 412
>07_03_1566 +
27766336-27766393,27766480-27766609,27766728-27766797,
27767134-27767196,27767741-27767815,27768035-27768154,
27768508-27768549,27768651-27768725,27768909-27769055,
27769165-27769302,27769448-27769562,27769658-27769746,
27770062-27770184
Length = 414
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +1
Query: 148 RSNLCVNFGCRDHLICRSPGHLLDRA*LLKDSCYRILTQVLLDKSID 288
R++ ++ R H++ +PG LLD K + L ++LD++ D
Sbjct: 93 RTSQTISLAKRPHVVVGTPGRLLDHLTNTKGFSFNKLKYLVLDEADD 139
>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
Length = 974
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -2
Query: 148 GDCNRH*ARNIIFVKTRTYRSLYNFYSTSLTDTACTGVISLI 23
G+ N H A N + + YR L FYS S + A VI L+
Sbjct: 854 GNSNDHAAGNPVMHDKKRYRYLIFFYSNSTSFVASIVVIILL 895
>06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338
Length = 740
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -2
Query: 148 GDCNRH*ARNIIFVKTRTYRSLYNFYSTSLTDTACTGVISLI 23
G+ N H A + + R YR L FYS S + A VI L+
Sbjct: 615 GNSNGHAAGDPVMHDNRRYRYLIFFYSNSFSFMASIVVIILL 656
>05_04_0369 -
20691100-20691235,20691318-20691488,20691540-20691940,
20692084-20692452,20692540-20692986,20693065-20693772
Length = 743
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 306 LRRTQRPSRTGPDPCPPRRKTSA 374
+R T RP+ T P CPP+R SA
Sbjct: 472 IRVTARPT-TAPGGCPPKRPASA 493
>04_03_0365 -
14950398-14950880,14950967-14951262,14951277-14951413,
14951562-14952039,14952203-14952215
Length = 468
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 306 LRRTQRPSRTGPDPCPPRRKTSA 374
+R T RP+ T P CPP+R SA
Sbjct: 395 IRVTARPT-TAPGGCPPKRPASA 416
>04_03_0103 +
11288977-11290353,11291962-11292075,11294987-11295436,
11295813-11295910,11296023-11296206,11296979-11297068,
11301608-11301727,11301812-11302054,11302715-11302988,
11303237-11303357,11303591-11303849
Length = 1109
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 279 INRLELSEWLRRTQRPSRTGPDPCPPRR 362
++ LEL E + + R G DP PPRR
Sbjct: 116 VHSLELDEPEKSVVKSWRKGADPLPPRR 143
>03_01_0150 +
1191410-1191697,1191818-1191941,1192063-1192121,
1192565-1192629,1192838-1192931,1193005-1193085,
1193176-1193287,1193949-1194036,1194440-1194561,
1194636-1194973,1195579-1195870,1195946-1196016,
1197741-1197849,1198760-1198803,1198804-1198847,
1200431-1200524
Length = 674
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +1
Query: 178 RDHLICRSPGHLLDRA*LLKDSCYRILTQVLLDKSIDSSCRN 303
R I P H D LL+D+C I + VL DKS RN
Sbjct: 304 RKREISSEPNHPAD---LLRDTCQIISSDVLKDKSESVDSRN 342
>02_02_0655 - 12679230-12679676
Length = 148
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 383 VASSAGFPPRWTGVRSRSGWSLSPSQPFRQLESI 282
VAS++G P W S+S + PFR+ +S+
Sbjct: 10 VASASGRSPSWGSAISQSFRQVEAEDPFRRAQSM 43
>01_06_0181 - 27262425-27263337,27263452-27263633
Length = 364
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 6/32 (18%)
Frame = +3
Query: 288 LELSEWLRRTQRP-----SRTGPDPCP-PRRK 365
+EL+ WL+ RP T P PCP PRRK
Sbjct: 258 IELNPWLKDILRPFPPPLPPTPPPPCPSPRRK 289
>12_02_0306 + 17307166-17309091
Length = 641
Score = 26.2 bits (55), Expect = 9.6
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -2
Query: 361 LLGGQGSGPVRDGL*VRLSHSDS-SSLLICQARPGLVSGSTSPSGVMHGPADGRG 200
L GG G RDG+ VRL+ + + + + G+ G+ G G DG G
Sbjct: 123 LCGGGARGGARDGVGVRLTGGGAGAGAGVGSSLAGVGGGTLCGGGARGGARDGGG 177
>09_04_0667 - 19323771-19323858,19324022-19324076,19324582-19325185
Length = 248
Score = 26.2 bits (55), Expect = 9.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 286 DSSCRNG*DGLRDHPERDRTPVHRGGKPAL 375
DS C +G++ P R RT + R GKP +
Sbjct: 202 DSPCCESSNGIKTSPLRARTHMLRWGKPLM 231
>07_01_1167 + 11030200-11031165,11031273-11031407,11031509-11031874
Length = 488
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 300 EWLRRTQRPSRTGPDPCPP 356
E LR RP+ T PDP PP
Sbjct: 158 EELRFHYRPNMTAPDPLPP 176
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,496,925
Number of Sequences: 37544
Number of extensions: 254567
Number of successful extensions: 774
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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