Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0838
         (395 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20965| Best HMM Match : Fz (HMM E-Value=3.1)                        29   1.4  
SB_54232| Best HMM Match : Pkinase (HMM E-Value=1.1e-39)               28   3.2  
SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)               28   3.2  
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_48778| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.2  
SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_21896| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_21777| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-06)                 27   7.3  
SB_56923| Best HMM Match : PT (HMM E-Value=0.95)                       26   9.6  

>SB_20965| Best HMM Match : Fz (HMM E-Value=3.1)
          Length = 529

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 118 CFVLSACYNRRSNLCVNFGCRDHLICRSPGHLL 216
           C+VL    +R   +CV  GC D  + R  GH +
Sbjct: 179 CYVLVTYGSRNHGMCVVMGCFDEYLHRHYGHAI 211


>SB_54232| Best HMM Match : Pkinase (HMM E-Value=1.1e-39)
          Length = 1123

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -2

Query: 283 LICQARPGLVSGSTSPSGVMHGPADGRGNDKLNDPYTQNSHTNLNGDCN 137
           L+ + R   VS  +S + + H       NDK N+  T N + + +G CN
Sbjct: 228 LVQRDRASSVSTISSNAPLQHKADSDTSNDKNNNENTCNGNNSNSGTCN 276


>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
          Length = 3561

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = -2

Query: 346  GSGPVRDGL*VRLSHSDSSSLLICQARPGLVSGST-SPSGVMHGPADGRGNDKLNDPYTQ 170
            G   + D L    SH  S   L     PG    S+   SG  HG + GRGN     P T 
Sbjct: 2057 GGAMIADELGYNSSHGYSGRGLYGDTNPGHGKDSSFGGSGAGHGGSGGRGNIISGSPLTG 2116

Query: 169  NSHTNL 152
             ++ +L
Sbjct: 2117 FAYGDL 2122


>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2956

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 279 INRLELSEWLRRTQRPSRTGPDPCPPRRKTS 371
           I RL L E  ++  RP    P P PPR  TS
Sbjct: 206 IQRLHLEE--KKASRPPENRPIPTPPRETTS 234


>SB_48778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1165

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 265 PGLVSGSTSPSGVMHGPADGRGNDKLNDPYTQNSHTNLNGD 143
           PG+VSG     G M GP   +G  +  DPY   +   +N D
Sbjct: 351 PGMVSGIGQ--GAMPGPPGDKGIVRGGDPYAGTTQAPVNVD 389


>SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 292  SSLLICQARPGLVSGSTSPSGVMHGPADGRG 200
            S++ +   RPG V G  +  G+M GP  G G
Sbjct: 1000 SAITMSTLRPGSVDGIGAVGGLMGGPGGGGG 1030


>SB_21896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 759

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 320 LSPSQPFRQLESIDLSSKTWVSIR*HESFRSHARSSRWPGE 198
           L P  PF++LES+ +  K  VS+   E     A S   PG+
Sbjct: 451 LEPMLPFKRLESLPIPDKVTVSMTVSEPAVLTALSDLHPGK 491


>SB_21777| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-06)
          Length = 341

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 124 RNIIFVKTRTYRSLYNFYSTSLTDTACTGVISLI 23
           R + FVK+  YR+++ F ST LT  A + +  L+
Sbjct: 124 RLLFFVKSSWYRAIFGFKST-LTTIATSWIFQLV 156


>SB_56923| Best HMM Match : PT (HMM E-Value=0.95)
          Length = 441

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +3

Query: 198 FPRP--SAGPCMTPEGLVLPDTNP 263
           FP P  S GP ++P GL  PD +P
Sbjct: 351 FPSPIGSHGPSISPAGLPTPDPSP 374


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,280,105
Number of Sequences: 59808
Number of extensions: 295656
Number of successful extensions: 712
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)