Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0838
         (395 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23521-2|AAC46815.2|  316|Caenorhabditis elegans Hypothetical pr...    27   4.9  
U23521-1|ABD63220.1|  348|Caenorhabditis elegans Hypothetical pr...    27   4.9  
AC084158-11|AAK68558.1|  555|Caenorhabditis elegans Hypothetical...    27   4.9  
U41272-9|AAA82452.4| 1256|Caenorhabditis elegans Prion-like-(q/n...    26   8.5  

>U23521-2|AAC46815.2|  316|Caenorhabditis elegans Hypothetical
           protein F41C3.8a protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
 Frame = -2

Query: 346 GSGPVRDGL*VRLSHSDSSSLLICQARPGL--VSGSTSPSGVM---HGPADG----RGND 194
           GS P+R     R S +    LL  Q RP     +G   PS  M   H  AD     R +D
Sbjct: 63  GSTPLRVNTSNRSSANSQRPLLPPQDRPVRFQTNGHLQPSVYMPTTHSQADSSESRRKHD 122

Query: 193 KLNDPYTQNSHT 158
           KL+D Y+Q+  T
Sbjct: 123 KLSDVYSQSGDT 134


>U23521-1|ABD63220.1|  348|Caenorhabditis elegans Hypothetical
           protein F41C3.8b protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
 Frame = -2

Query: 346 GSGPVRDGL*VRLSHSDSSSLLICQARPGL--VSGSTSPSGVM---HGPADG----RGND 194
           GS P+R     R S +    LL  Q RP     +G   PS  M   H  AD     R +D
Sbjct: 95  GSTPLRVNTSNRSSANSQRPLLPPQDRPVRFQTNGHLQPSVYMPTTHSQADSSESRRKHD 154

Query: 193 KLNDPYTQNSHT 158
           KL+D Y+Q+  T
Sbjct: 155 KLSDVYSQSGDT 166


>AC084158-11|AAK68558.1|  555|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.14 protein.
          Length = 555

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +3

Query: 201 PRPSAGPCMTPEGLVLPDTNPGLA*QINRLELSEWLRRTQRPSRTGPDPCPP 356
           P P++ P   P     P  N   A  I +   ++  RRT +P    P P PP
Sbjct: 263 PTPTSRPTSAPTIPPQPSANSTRAPDIGKTLSTQPPRRTPQPHPKPPPPPPP 314


>U41272-9|AAA82452.4| 1256|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 62
           protein.
          Length = 1256

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 235 SGVMHGPADGRGNDKLNDPYTQNSHTNLNGDCNR 134
           + +M G     GN  +N   +QNS +N  GD N+
Sbjct: 532 TNLMGGSNTQNGNTMVNGQSSQNSSSNFFGDMNQ 565


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,603,632
Number of Sequences: 27780
Number of extensions: 214836
Number of successful extensions: 502
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)